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Pattern-matching-based document-compression systems (e.g. for faxing) rely on finding a small set of patterns that can be used to represent all of the ink in the document. Finding an optimal set of patterns is NP-hard; previous compression…

Data Structures and Algorithms · Computer Science 2016-01-19 Qin Zhang , John Danskin , Neal Young

Understanding protein dynamics are essential for deciphering protein functional mechanisms and developing molecular therapies. However, the complex high-dimensional dynamics and interatomic interactions of biological processes pose…

Quantitative Methods · Quantitative Biology 2025-05-15 Tiexin Qin , Mengxu Zhu , Chunyang Li , Terry Lyons , Hong Yan , Haoliang Li

A self-index is a compressed data structure that supports locate queries -- reporting all positions where a given pattern occurs in a string while maintaining the string in compressed form. While many self-indexes have been proposed,…

Data Structures and Algorithms · Computer Science 2025-10-30 Takaaki Nishimoto , Yasuo Tabei

Conservation laws are an inherent feature in many systems modeling real world phenomena, in particular, those modeling biological and chemical systems. If the form of the underlying dynamical system is known, linear algebra and algebraic…

Numerical Analysis · Mathematics 2024-03-11 Tracey Oellerich , Maria Emelianenko

In order to facilitate the accesses of general users to knowledge graphs, an increasing effort is being exerted to construct graph-structured queries of given natural language questions. At the core of the construction is to deduce the…

Artificial Intelligence · Computer Science 2024-04-01 Ruijie Wang , Meng Wang , Jun Liu , Michael Cochez , Stefan Decker

Complexity science offers a wide range of measures for quantifying unpredictability, structure, and information. Yet, a systematic conceptual organization of these measures is still missing. We present a unified framework that locates…

Machine Learning · Computer Science 2025-05-13 Nima Dehghani

In this paper, a new and novel data structure is proposed to dynamically insert and delete segments. Unlike the standard segment trees[3], the proposed data structure permits insertion of a segment with interval range beyond the interval…

Computational Geometry · Computer Science 2015-01-15 K. S. Easwarakumar , T. Hema

During the past decades significant efforts have been made to propose data structures for answering connectivity queries on fully dynamic graphs, i.e., graphs with frequent insertions and deletions of edges. However, a comprehensive…

Databases · Computer Science 2025-01-13 Qing Chen , Michael H. Böhlen , Sven Helmer

Graphs naturally appear in several real-world contexts including social networks, the web network, and telecommunication networks. While the analysis and the understanding of graph structures have been a central area of study in algorithm…

Data Structures and Algorithms · Computer Science 2019-09-17 Gramoz Goranci

Despite their high accuracy, complex neural networks demand significant computational resources, posing challenges for deployment on resource constrained devices such as mobile phones and embedded systems. Compression algorithms have been…

Machine Learning · Computer Science 2025-09-23 Ali Aghababaei-Harandi , Massih-Reza Amini

The non-stationary nature of data streams strongly challenges traditional machine learning techniques. Although some solutions have been proposed to extend traditional machine learning techniques for handling data streams, these approaches…

Machine Learning · Computer Science 2021-06-23 Xuyang Yan , Abdollah Homaifar , Mrinmoy Sarkar , Abenezer Girma , Edward Tunstel

Answering connectivity queries is fundamental to fully dynamic graphs where edges and vertices are inserted and deleted frequently. Existing work proposes data structures and algorithms with worst-case guarantees. We propose a new data…

Data Structures and Algorithms · Computer Science 2022-07-19 Qing Chen , Oded Lachish , Sven Helmer , Michael Böhlen

Indexing of static and dynamic sets is fundamental to a large set of applications such as information retrieval and caching. Denoting the characteristic vector of the set by B, we consider the problem of encoding sets and multisets to…

Data Structures and Algorithms · Computer Science 2018-09-17 Ran Ben Basat , Seungbum Jo , Srinivasa Rao Satti , Shubham Ugare

Dynamic tree data structures maintain a forest while supporting insertion and deletion of edges and a broad set of queries in $O(\log n)$ time per operation. Such data structures are at the core of many modern algorithms. Recent work has…

Data Structures and Algorithms · Computer Science 2025-06-23 Humza Ikram , Andrew Brady , Daniel Anderson , Guy Blelloch

Entity resolution is a widely studied problem with several proposals to match records across relations. Matching textual content is a widespread task in many applications, such as question answering and search. While recent methods achieve…

Databases · Computer Science 2021-12-17 Naser Ahmadi , Hansjorg Sand , Paolo Papotti

In real-world, many problems can be formulated as the alignment between two geometric patterns. Previously, a great amount of research focus on the alignment of 2D or 3D patterns, especially in the field of computer vision. Recently, the…

Machine Learning · Computer Science 2018-11-20 Hu Ding , Mingquan Ye

Hypergraphs, increasingly utilised to model complex and diverse relationships in modern networks, have gained significant attention for representing intricate higher-order interactions. Among various challenges, cohesive subgraph discovery…

Social and Information Networks · Computer Science 2025-07-14 Dahee Kim , Hyewon Kim , Song Kim , Minseok Kim , Junghoon Kim , Yeon-Chang Lee , Sungsu Lim

In this paper we investigate the problem of learning evolving concepts over a combinatorial structure. Previous work by Emamjomeh-Zadeh et al. [2020] introduced dynamics into interactive learning as a way to model non-static user…

Machine Learning · Computer Science 2022-04-15 Xing Gao , Thomas Maranzatto , Lev Reyzin

Graphs are widespread data structures used to model a wide variety of problems. The sheer amount of data to be processed has prompted the creation of a myriad of systems that help us cope with massive scale graphs. The pressure to deliver…

Distributed, Parallel, and Cluster Computing · Computer Science 2014-10-09 Luis M. Vaquero , Felix Cuadrado , Matei Ripeanu

Document structure analysis, such as zone segmentation and table recognition, is a complex problem in document processing and is an active area of research. The recent success of deep learning in solving various computer vision and machine…

Computer Vision and Pattern Recognition · Computer Science 2019-07-04 Shah Rukh Qasim , Hassan Mahmood , Faisal Shafait