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Computational Fluid Dynamics (CFD) simulations are often constrained by the memory-bound nature of sparse matrix-vector operations, which eventually limits performance on modern high-performance computing (HPC) systems. This work introduces…

Many large-scale systems rely on high-quality deep representations (embeddings) to facilitate tasks like retrieval, search, and generative modeling. Matryoshka Representation Learning (MRL) recently emerged as a solution for adaptive…

Machine Learning · Computer Science 2025-05-21 Tiansheng Wen , Yifei Wang , Zequn Zeng , Zhong Peng , Yudi Su , Xinyang Liu , Bo Chen , Hongwei Liu , Stefanie Jegelka , Chenyu You

Multi-vector retrieval (MVR) models, exemplified by ColBERT, have established new benchmarks in retrieval accuracy by preserving fine-grained token-level interactions. However, this granularity imposes prohibitive storage and retrieval…

Information Retrieval · Computer Science 2026-05-29 Lixuan Guo , Yifei Wang , Tiansheng Wen , Aosong Feng , Stefanie Jegelka , Chenyu You

Sparse matrix vector multiplication (SpMV) is a fundamental kernel in scientific codes that rely on iterative solvers. In this first part of our work, we present both a sequential and a basic MPI parallel implementations of SpMV, aiming to…

Logic in Computer Science · Computer Science 2025-10-16 Junchao Zhang

Recently, graphics processors (GPUs) have been increasingly leveraged in a variety of scientific computing applications. However, architectural differences between CPUs and GPUs necessitate the development of algorithms that take advantage…

Mathematical Software · Computer Science 2015-01-05 Jonathan Wong , Ellen Kuhl , Eric Darve

Despite the importance of sparse matrices in numerous fields of science, software implementations remain difficult to use for non-expert users, generally requiring the understanding of underlying details of the chosen sparse matrix storage…

Mathematical Software · Computer Science 2019-07-23 Conrad Sanderson , Ryan Curtin

Sparse matrix-vector products (SpMVs) are a bottleneck in many scientific codes. Due to the heavy strain on the main memory interface from loading the sparse matrix and the possibly irregular memory access pattern, SpMV typically exhibits…

Distributed, Parallel, and Cluster Computing · Computer Science 2026-05-12 Dane C. Lacey , Christie L. Alappat , Florian Lange , Georg Hager , Holger Fehske , Gerhard Wellein

This paper addresses spatial programming of sparse matrix computations for productive performance. The challenge is how to express an irregular computation and its optimizations in a regular way. A sparse matrix has (non-zero) values and a…

Mathematical Software · Computer Science 2018-10-18 Hongbo Rong

The SpMV kernel is characterized by high performance variation per input matrix and computing platform. While GPUs were considered State-of-the-Art for SpMV, with the emergence of advanced multicore CPUs and low-power FPGA accelerators, we…

Distributed, Parallel, and Cluster Computing · Computer Science 2023-02-09 Panagiotis Mpakos , Dimitrios Galanopoulos , Petros Anastasiadis , Nikela Papadopoulou , Nectarios Koziris , Georgios Goumas

Sparse matrix-sparse matrix multiplication (SpGEMM) is a key kernel in many scientific applications and graph workloads. Unfortunately, SpGEMM is bottlenecked by data movement due to its irregular memory access patterns. Significant work…

Distributed, Parallel, and Cluster Computing · Computer Science 2025-07-30 Abdullah Al Raqibul Islam , Helen Xu , Dong Dai , Aydın Buluç

Compressed Sparse Column (CSC) and Coordinate (COO) are popular compression formats for sparse matrices. However, both CSC and COO are general purpose and cannot take advantage of any of the properties of the data other than sparsity, such…

Data Structures and Algorithms · Computer Science 2025-07-01 Skyler Ruiter , Seth Wolfgang , Marc Tunnell , Timothy Triche , Erin Carrier , Zachary DeBruine

Intel Xeon Phi is a recently released high-performance coprocessor which features 61 cores each supporting 4 hardware threads with 512-bit wide SIMD registers achieving a peak theoretical performance of 1Tflop/s in double precision. Many…

Performance · Computer Science 2013-02-06 Erik Saule , Kamer Kaya , Umit V. Catalyurek

We consider a sparse matrix-matrix multiplication (SpGEMM) setting where one matrix is square and the other is tall and skinny. This special variant, called TS-SpGEMM, has important applications in multi-source breadth-first search,…

Distributed, Parallel, and Cluster Computing · Computer Science 2024-08-23 Isuru Ranawaka , Md Taufique Hussain , Charles Block , Gerasimos Gerogiannis , Josep Torrellas , Ariful Azad

Sparse matrix-vector multiplication (SpMV) is the core operation in many common network and graph analytics, but poor performance of the SpMV kernel handicaps these applications. This work quantifies the effect of matrix structure on SpMV…

Distributed, Parallel, and Cluster Computing · Computer Science 2016-11-15 Daniel Kimball , Elizabeth Michel , Paul Keltcher , Michael M. Wolf

Graph neural networks (GNNs) have emerged as a powerful tool to process graph-based data in fields like communication networks, molecular interactions, chemistry, social networks, and neuroscience. GNNs are characterized by the ultra-sparse…

Hardware Architecture · Computer Science 2023-07-14 Nanda K. Unnikrishnan , Joe Gould , Keshab K. Parhi

Sparse matrix vector multiplication (SpMV) is one of the most common operations in scientific and high-performance applications, and is often responsible for the application performance bottleneck. While the sparse matrix representation has…

Mathematical Software · Computer Science 2018-05-31 Shizhao Chen , Jianbin Fang , Donglin Chen , Chuanfu Xu , Zheng Wang

Sparse matrix-vector multiplication (SpMV) plays a vital role in various scientific and engineering fields, from scientific computing to machine learning. Traditional general-purpose processors often fall short of their peak performance…

Hardware Architecture · Computer Science 2024-10-15 Armin Gerami , Bahar Asgari

Graph neural networks (GNNs) are emerging as a powerful technique for modeling graph structures. Due to the sparsity of real-world graph data, GNN performance is limited by extensive sparse matrix multiplication (SpMM) operations involved…

Machine Learning · Computer Science 2021-11-02 Shenghao Qiu , You Liang , Zheng Wang

Sparse matrix operations involve a large number of zero operands which makes most of the operations redundant. The amount of redundancy magnifies when a matrix operation repeatedly executes on sparse data. Optimizing matrix operations for…

Mathematical Software · Computer Science 2023-07-13 Barnali Basak , Uday P. Khedker , Supratim Biswas

Sparse matrix representations are ubiquitous in computational science and machine learning, leading to significant reductions in compute time, in comparison to dense representation, for problems that have local connectivity. The adoption of…

Machine Learning · Computer Science 2023-11-13 Nicolas Nytko , Ali Taghibakhshi , Tareq Uz Zaman , Scott MacLachlan , Luke N. Olson , Matt West
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