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Related papers: A Cartesian Cut Cell Method for Rarefied Flow Simu…

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Rare events are ubiquitous in many different fields, yet they are notoriously difficult to simulate because few, if any, events are observed in a conventiona l simulation run. Over the past several decades, specialised simulation methods…

Statistical Mechanics · Physics 2015-05-13 Rosalind J. Allen , Chantal Valeriani , Pieter Rein ten Wolde

We present a new method, Non-Stationary Forward Flux Sampling, that allows efficient simulation of rare events in both stationary and non-stationary stochastic systems. The method uses stochastic branching and pruning to achieve uniform…

Molecular Networks · Quantitative Biology 2015-06-03 Nils B. Becker , Rosalind J. Allen , Pieter Rein ten Wolde

We propose a simple modification of standard WENO finite volume methods for Cartesian grids, which retains the full spatial order of accuracy of the one-dimensional discretization when applied to nonlinear multidimensional systems of…

Numerical Analysis · Mathematics 2016-08-30 Pawel Buchmüller , Christiane Helzel

Recently, the application of machine learning models has gained momentum in natural sciences and engineering, which is a natural fit due to the abundance of data in these fields. However, the modeling of physical processes from simulation…

Machine Learning · Computer Science 2021-05-05 Andreas Mayr , Sebastian Lehner , Arno Mayrhofer , Christoph Kloss , Sepp Hochreiter , Johannes Brandstetter

Existing NeRF-based methods for large scene reconstruction often have limitations in visual quality and rendering speed. While the recent 3D Gaussian Splatting works well on small-scale and object-centric scenes, scaling it up to large…

Computer Vision and Pattern Recognition · Computer Science 2024-02-28 Jiaqi Lin , Zhihao Li , Xiao Tang , Jianzhuang Liu , Shiyong Liu , Jiayue Liu , Yangdi Lu , Xiaofei Wu , Songcen Xu , Youliang Yan , Wenming Yang

In this paper, a simple field function is presented for facilitating the solution of complex and dynamic fluid-solid systems on Cartesian grids with interface-resolved fluid-fluid, fluid-solid, and solid-solid interactions. For a…

Computational Physics · Physics 2018-04-20 Huangrui Mo , Fue-Sang Lien , Fan Zhang , Duane S. Cronin

In this work, we use a moving Voronoi and sharp interface approach for simulating two-phase flows. At every time step, the mesh is generated anew from Voronoi seeds that behave as material points. The paper is a continuation of our previous…

Numerical Analysis · Mathematics 2025-03-18 Ondřej Kincl , Ilya Peshkov , Walter Boscheri

Tracking of plant cells in images obtained by microscope is a challenging problem due to biological phenomena such as large number of cells, non-uniform growth of different layers of the tightly packed plant cells and cell division.…

Computer Vision and Pattern Recognition · Computer Science 2023-09-22 Md Shazid Islam , Arindam Dutta , Calvin-Khang Ta , Kevin Rodriguez , Christian Michael , Mark Alber , G. Venugopala Reddy , Amit K. Roy-Chowdhury

This paper proposes a solution to the problem of smooth path planning for mobile robots in dynamic and unknown environments. A novel concept of Time-Warped Grid is introduced to predict the pose of obstacles in the environment and avoid…

Robotics · Computer Science 2019-03-19 Siavash Farzan , Guilherme N. DeSouza

Recent advances in electron microscopy have enabled the imaging of single cells in 3D at nanometer length scale resolutions. An uncharted frontier for in silico biology is the ability to simulate cellular processes using these observed…

Accelerated coarse-graining (CG) algorithms for simulating heterogeneous chemical reactions on surface systems have recently gained much attention. In the present paper, we consider such an issue by investigating the oscillation behavior of…

Statistical Mechanics · Physics 2011-04-18 Ting Rao , Zhen Zhang , Zhonghuai Hou , Houwen Xin

An improved diffuse boundary condition, where the number flux of the incoming real molecules on the wall surface is calculated using the molecular variables rather than the cell's macroscopic variables, is proposed to eliminate the…

Computational Physics · Physics 2014-03-18 Jun Li

One of the central problems in the study of rarefied gas dynamics is to find the steady-state solution of the Boltzmann equation quickly. When the Knudsen number is large, i.e. the system is highly rarefied, the conventional iteration…

Computational Physics · Physics 2020-02-19 Wei Su , Lianhua Zhu , Peng Wang , Yonghao Zhang , Lei Wu

In this paper I present a first attempt for a possible description of fluids dynamics by mean of a cellular automata technique. With the use of simple and elementary rules, based on random behaviour either, the model permits to obtain the…

Computational Complexity · Computer Science 2007-05-23 Gianluca Argentini

We develop an explicit second order staggered finite difference discretization scheme for simulating the transport of highly heterogeneous gas mixtures through pipeline networks. This study is motivated by the proposed blending of hydrogen…

Dynamical Systems · Mathematics 2024-04-09 Yan Brodskyi , Vitaliy Gyrya , Anatoly Zlotnik

We present GridFF, an efficient method for simulating molecules on rigid substrates, derived from techniques used in protein-ligand docking in biochemistry. By projecting molecule-substrate interactions onto precomputed spatial grids with…

Chemical Physics · Physics 2025-08-22 Indranil Mal , Milan Kočí , Paolo Nicolini , Prokop Hapala

Simulation and control of the transient flow in natural gas networks involve solving partial differential equations (PDEs). This paper proposes a semi-analytical solutions (SAS) approach for fast and accurate simulation of the natural gas…

Dynamical Systems · Mathematics 2022-10-10 Xin Xu , Rui Yao , Kai Sun , Feng Qiu

We improve on random sampling techniques for approximately solving problems that involve cuts and flows in graphs. We give a near-linear-time construction that transforms any graph on n vertices into an O(n\log n)-edge graph on the same…

Data Structures and Algorithms · Computer Science 2007-05-23 Andras Benczur , David R. Karger

Multiscale non-equilibrium physics at large variations of local Knudsen number are encountered in applications of aerospace engineering and micro-electro-mechanical systems, such as high-speed flying vehicles and low pressure of the…

Fluid Dynamics · Physics 2023-12-06 Yufeng Wei , Wenpei Long , Kun Xu

Many living and physical systems such as cell aggregates, tissues or bacterial colonies behave as unconventional systems of particles that are strongly constrained by volume exclusion and shape interactions. Understanding how these…

Quantitative Methods · Quantitative Biology 2026-05-20 Antoine Diez , Jean Feydy