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We present here the first systematic treatment of the problems posed by the visualization and analysis of large-scale, parallel adaptive mesh refinement (AMR) simulations on an Eulerian grid. When compared to those obtained by constructing…

Graphics · Computer Science 2017-02-17 Guénolé Harel , Jacques-Bernard Lekien , Philippe P. Pébaÿ

There is a great need in several areas of astrophysics and space-physics to carry out high order of accuracy, divergence-free MHD simulations on spherical meshes. This requires us to pay careful attention to the interplay between mesh…

Hero-class HPC simulations rely on Adaptive Mesh Refinement (AMR) to reduce compute and memory demands while maintaining accuracy. This work analyzes the performance of Parthenon, a block-structured AMR benchmark, on CPU-GPU systems. We…

Distributed, Parallel, and Cluster Computing · Computer Science 2025-09-25 Akash Poptani , Alireza Khadem , Scott Mahlke , Jonah Miller , Joshua Dolence , Reetuparna Das

The restricted Boltzmann machine (RBM) has been successfully applied to solve the many-electron Schr$\ddot{\text{o}}$dinger equation. In this work we propose a single-layer fully connected neural network adapted from RBM and apply it to…

Quantum Physics · Physics 2023-01-11 Yangjun Wu , Xiansong Xu , Dario Poletti , Yi Fan , Chu Guo , Honghui Shang

Mainstream approaches to spectral reconstruction (SR) primarily focus on designing Convolution- and Transformer-based architectures. However, CNN methods often face challenges in handling long-range dependencies, whereas Transformers are…

Computer Vision and Pattern Recognition · Computer Science 2024-10-10 Xinying Wang , Zhixiong Huang , Sifan Zhang , Jiawen Zhu , Paolo Gamba , Lin Feng

Random Walk Metropolis Hastings (RWMH) algorithm, is quite inefficient in high dimensions because of its abysmally slow acceptance rate. The slow acceptance rate results from the fact that RWMH separately updates each coordinate of the…

Methodology · Statistics 2014-08-29 Kushal K. Dey , Sourabh Bhattacharya

Numerical relativity has brought about profound and wide-ranging influences on modern astrophysics and gravitational-wave astronomy. In this study, we present a user-friendly Python interface for the numerical relativity code AMSS-NCKU.…

General Relativity and Quantum Cosmology · Physics 2026-03-11 Chen-Kai Qiao , Yi Zheng , Zhou-Jian Cao

The cost and accuracy of simulating complex physical systems using the Finite Element Method (FEM) scales with the resolution of the underlying mesh. Adaptive meshes improve computational efficiency by refining resolution in critical…

We discuss the implementation of a new regular algorithm for simulation of the gravitational few-body problem. The algorithm uses components from earlier methods, including the chain structure, the logarithmic Hamiltonian, and the…

Astrophysics · Physics 2009-11-13 Seppo Mikkola , David Merritt

We describe AthenaK: a new implementation of the Athena++ block-based adaptive mesh refinement (AMR) framework using the Kokkos programming model. Finite volume methods for Newtonian, special relativistic (SR), and general relativistic (GR)…

Instrumentation and Methods for Astrophysics · Physics 2024-09-25 James M. Stone , Patrick D. Mullen , Drummond Fielding , Philipp Grete , Minghao Guo , Philipp Kempski , Elias R. Most , Christopher J. White , George N. Wong

We present a major upgrade of MGCAMB, a patch for the Einstein-Boltzmann solver CAMB used for phenomenological tests of general relativity against cosmological datasets. This new version is compatible with the latest CosmoMC code and…

Cosmology and Nongalactic Astrophysics · Physics 2019-05-08 Alex Zucca , Levon Pogosian , Alessandra Silvestri , Gong-Bo Zhao

We describe a photon-conserving radiative transfer algorithm, using a spatially-adaptive ray tracing scheme, and its parallel implementation into the adaptive mesh refinement (AMR) cosmological hydrodynamics code, Enzo. By coupling the…

Instrumentation and Methods for Astrophysics · Physics 2015-05-20 John H. Wise , Tom Abel

Biological classification with interpretability remains a challenging task. For this, we introduce a novel encoding framework, Multi-Scale Reversible Chaos Game Representation (MS-RCGR), that transforms biological sequences into…

Machine Learning · Computer Science 2026-04-21 Sarwan Ali , Taslim Murad

General Relativity (GR) is a phenomenologically successful theory that rests on firm foundations, but has not been tested on cosmological scales. The advent of dark energy (and possibly even the requirement of cold dark matter), has…

General Relativity and Quantum Cosmology · Physics 2010-05-12 Constantinos Skordis

Alamo is a high-performance scientific code that uses block-structured adaptive mesh refinement to solve such problems as: the ignition and burn of solid rocket propellant, plasticity, damage and fracture in materials undergoing loading,…

Computational Physics · Physics 2025-12-03 Brandon Runnels , Vinamra Agrawal , Maycon Meier

We report on a new open-source, user-friendly numerical relativity code package called SENR/NRPy+. Our code extends previous implementations of the BSSN reference-metric formulation to a much broader class of curvilinear coordinate systems,…

General Relativity and Quantum Cosmology · Physics 2018-03-30 Ian Ruchlin , Zachariah B. Etienne , Thomas W. Baumgarte

Gravitational waves from binary black hole (BBH) mergers allow us to test general relativity in the strong-field, high-curvature regime. However, existing gravitational wave-based tests have so far assumed non-eccentric signal sources,…

General Relativity and Quantum Cosmology · Physics 2025-11-26 Danilo Chiaramello , Nicolò Cibrario , Jacob Lange , Koustav Chandra , Rossella Gamba , Raffaella Bonino , Alessandro Nagar

The magnetohydrodynamics (MHD) equations are continuum models used in the study of a wide range of plasma physics systems, including the evolution of complex plasma dynamics in tokamak disruptions. However, efficient numerical solution…

Computational Physics · Physics 2022-02-09 Qi Tang , Luis Chacon , Tzanio V. Kolev , John N. Shadid , Xian-Zhu Tang

We implement a spatially fixed mesh refinement under spherical symmetry for the characteristic formulation of General Relativity. The Courant-Friedrich-Levy (CFL) condition lets us deploy an adaptive resolution in (retarded-like) time, even…

General Relativity and Quantum Cosmology · Physics 2017-07-27 W. Barreto , H. P. de Oliveira , B. Rodriguez-Mueller

While large reasoning models demonstrate strong performance on complex tasks, they lack the ability to adjust reasoning token usage based on task difficulty. This often leads to the "overthinking" problem -- excessive and unnecessary…

Computation and Language · Computer Science 2025-10-14 Siye Wu , Jian Xie , Yikai Zhang , Aili Chen , Kai Zhang , Yu Su , Yanghua Xiao