Related papers: Approximating LZ77 in Small Space
We present a new algorithm for computing the Lempel-Ziv Factorization (LZ77) of a given string of length $N$ in linear time, that utilizes only $N\log N + O(1)$ bits of working space, i.e., a single integer array, for constant size integer…
Motivated by the imminent growth of massive, highly redundant genomic databases, we study the problem of compressing a string database while simultaneously supporting fast random access, substring extraction and pattern matching to the…
Lempel-Ziv (LZ77) factorization is a fundamental problem in string processing: Greedily partition a given string $T$ from left to right into blocks (called phrases) so that each phrase is either the leftmost occurrence of a letter or the…
Given a string $S$, the \emph{compressed indexing problem} is to preprocess $S$ into a compressed representation that supports fast \emph{substring queries}. The goal is to use little space relative to the compressed size of $S$ while…
Two recent lower bounds on the compressibility of repetitive sequences, $\delta \le \gamma$, have received much attention. It has been shown that a length-$n$ string $S$ over an alphabet of size $\sigma$ can be represented within the…
It is well-known that, given a probability distribution over $n$ characters, in the worst case it takes (\Theta (n \log n)) bits to store a prefix code with minimum expected codeword length. However, in this paper we first show that, for…
We give an $\mathcal{O}(n \log n)$-time, $\mathcal{O}(n)$-space algorithm for factoring a string into the minimum number of palindromic substrings. That is, given a string $S [1..n]$, in $\mathcal{O}(n \log n)$ time our algorithm returns…
We present an efficient algorithm for computing the LZ78 factorization of a text, where the text is represented as a straight line program (SLP), which is a context free grammar in the Chomsky normal form that generates a single string.…
We prove two results about width of words in $SL_n(\mathbb{Z})$. The first is that, for every $n \geq 3$, there is a constant $C(n)$ such that the width of any word in $SL_n(\mathbb{Z})$ is less than $C(n)$. The second result is that, for…
Let $s$ be a string of length $n$ over an alphabet of constant size $\sigma$ and let $c$ and $\epsilon$ be constants with (1 \geq c \geq 0) and (\epsilon > 0). Using (O (n)) time, (O (n^c)) bits of memory and one pass we can always encode…
In this paper we give an infinite family of strings for which the length of the Lempel-Ziv'77 parse is a factor $\Omega(\log n/\log\log n)$ smaller than the smallest run-length grammar.
The random access problem for compressed strings is to build a data structure that efficiently supports accessing the character in position $i$ of a string given in compressed form. Given a grammar of size $n$ compressing a string of size…
We investigate two closely related LZ78-based compression schemes: LZMW (an old scheme by Miller and Wegman) and LZD (a recent variant by Goto et al.). Both LZD and LZMW naturally produce a grammar for a string of length $n$; we show that…
This paper investigates the size in bits of the LZ77 encoding, which is the most popular and efficient variant of the Lempel-Ziv encodings used in data compression. We prove that, for a wide natural class of variable-length encoders for…
The compressed indexing problem is to preprocess a string $S$ of length $n$ into a compressed representation that supports pattern matching queries. That is, given a string $P$ of length $m$ report all occurrences of $P$ in $S$. We present…
Given a set of n disjoint balls b1, . . ., bn in IRd, we provide a data structure, of near linear size, that can answer (1 \pm \epsilon)-approximate kth-nearest neighbor queries in O(log n + 1/\epsilon^d) time, where k and \epsilon are…
The bin packing problem is to find the minimum number of bins of size one to pack a list of items with sizes $a_1,..., a_n$ in $(0,1]$. Using uniform sampling, which selects a random element from the input list each time, we develop a…
Given an LZW/LZ78 compressed text, we want to find an approximate occurrence of a given pattern of length m. The goal is to achieve time complexity depending on the size n of the compressed representation of the text instead of its length.…
We present an algorithm computing the longest periodic subsequence of a string of length $n$ in $O(n^7)$ time with $O(n^4)$ words of space. We obtain improvements when restricting the exponents or extending the search allowing the reported…
We present the first linear time algorithm to construct the $2n$-bit version of the Lyndon array for a string of length $n$ using only $o(n)$ bits of working space. A simpler variant of this algorithm computes the plain ($n\lg n$-bit)…