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Taking a Feynman categorical perspective, several key aspects of the geometry of surfaces are deduced from combinatorial constructions with graphs. This provides a direct route from combinatorics of graphs to string topology operations via…

Algebraic Topology · Mathematics 2022-01-26 Clemens Berger , Ralph M. Kaufmann

Pairwise ordered tree alignment are combinatorial objects that appear in RNA secondary structure comparison. However, the usual representation of tree alignments as supertrees is ambiguous, i.e. two distinct supertrees may induce identical…

Quantitative Methods · Quantitative Biology 2016-03-08 Cedric Chauve , Julien Courtiel , Yann Ponty

Neural networks with tree-based sentence encoders have shown better results on many downstream tasks. Most of existing tree-based encoders adopt syntactic parsing trees as the explicit structure prior. To study the effectiveness of…

Computation and Language · Computer Science 2018-08-30 Haoyue Shi , Hao Zhou , Jiaze Chen , Lei Li

A quantitative model of concurrent interaction is introduced. The basic objects are linear combinations of partial order relations, acted upon by a group of permutations that represents potential non-determinism in synchronisation. This…

Logic in Computer Science · Computer Science 2011-07-08 Emmanuel Beffara

A gradual semantics takes a weighted argumentation framework as input and outputs a final acceptability degree for each argument, with different semantics performing the computation in different manners. In this work, we consider the…

Artificial Intelligence · Computer Science 2023-02-09 Nir Oren , Bruno Yun

We introduce a comprehensive data structure, tangle structure trees, which simultaneously displays all the $\mathcal{F}$-tangles of an abstract separation system for very general obstruction sets $\mathcal{F}$. It simultaneously also…

Combinatorics · Mathematics 2026-03-23 Hanno von Bergen , Reinhard Diestel

Risk assessment of cyber-physical systems, such as power plants, connected devices and IT-infrastructures has always been challenging: safety (i.e. absence of unintentional failures) and security (i.e. no disruptions due to attackers) are…

Cryptography and Security · Computer Science 2019-05-10 Étienne André , Didier Lime , Mathias Ramparison , Mariëlle Stoelinga

A Concept Tree is a structure for storing knowledge where the trees are stored in a database called a Concept Base. It sits between the highly distributed neural architectures and the distributed information systems, with the intention of…

Artificial Intelligence · Computer Science 2020-04-07 Kieran Greer

We describe an attentive encoder that combines tree-structured recursive neural networks and sequential recurrent neural networks for modelling sentence pairs. Since existing attentive models exert attention on the sequential structure, we…

Computation and Language · Computer Science 2016-10-11 Yao Zhou , Cong Liu , Yan Pan

The $n$th term of an automatic sequence is the output of a deterministic finite automaton fed with the representation of $n$ in a suitable numeration system. In this paper, instead of considering automatic sequences built on a numeration…

Formal Languages and Automata Theory · Computer Science 2023-06-22 Michel Rigo , Manon Stipulanti

We develop a purely set-theoretic formalism for binary trees and binary graphs. We define a category of binary automata, and display it as a fibred category over the category of binary graphs. We also relate the notion of binary graphs to…

Combinatorics · Mathematics 2007-05-23 N. Raghavendra

Sequence-to-sequence learning with neural networks has become the de facto standard for sequence prediction tasks. This approach typically models the local distribution over the next word with a powerful neural network that can condition on…

Computation and Language · Computer Science 2021-11-17 Yoon Kim

Connected acyclic graphs (trees) are data objects that hierarchically organize categories. Collections of trees arise in a diverse variety of fields, including evolutionary biology, public health, machine learning, social sciences and…

Methodology · Statistics 2025-12-01 Maria Alejandra Valdez Cabrera , Amy D Willis , Armeen Taeb

In this paper, we propose a first-order ontology for generalized stratified order structure. We then classify the models of the theory using model-theoretic techniques. An ontology mapping from this ontology to the core theory of Process…

Artificial Intelligence · Computer Science 2009-07-17 Dai Tri Man Le

Augmenting an existing sequential data structure with extra information to support greater functionality is a widely used technique. For example, search trees are augmented to build sequential data structures like order-statistic trees,…

Data Structures and Algorithms · Computer Science 2024-05-20 Panagiota Fatourou , Eric Ruppert

Sequential modelling entails making sense of sequential data, which naturally occurs in a wide array of domains. One example is systems that interact with users, log user actions and behaviour, and make recommendations of items of potential…

Information Retrieval · Computer Science 2021-09-15 Christian Hansen

The junction-tree representation provides an attractive structural property for organizing a decomposable graph. In this study, we present two novel stochastic algorithms, which we call the junction-tree expander and junction-tree collapser…

Statistics Theory · Mathematics 2021-02-16 Jimmy Olsson , Tetyana Pavlenko , Felix L. Rios

Traditional studies of memory for meaningful narratives focus on specific stories and their semantic structures but do not address common quantitative features of recall across different narratives. We introduce a statistical ensemble of…

Statistical Mechanics · Physics 2025-02-25 Weishun Zhong , Tankut Can , Antonis Georgiou , Ilya Shnayderman , Mikhail Katkov , Misha Tsodyks

We consider the problem of formalizing the familiar notion of widening in abstract interpretation in higher-order logic. It turns out that many axioms of widening (e.g. widening sequences are ascending) are not useful for proving…

Logic in Computer Science · Computer Science 2009-11-23 David Monniaux

Sequence theories are an extension of theories of strings with an infinite alphabet of letters, together with a corresponding alphabet theory (e.g. linear integer arithmetic). Sequences are natural abstractions of extendable arrays, which…

Logic in Computer Science · Computer Science 2023-08-02 Artur Jeż , Anthony W. Lin , Oliver Markgraf , Philipp Rümmer