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Phylogenetic mixtures model the inhomogeneous molecular evolution commonly observed in data. The performance of phylogenetic reconstruction methods where the underlying data is generated by a mixture model has stimulated considerable recent…

Populations and Evolution · Quantitative Biology 2007-06-30 Frederick A. Matsen , Mike Steel

A vast array of transformative technologies developed over the past decade has enabled measurement and perturbation at ever increasing scale, yet our understanding of many systems remains limited by experimental capacity. Overcoming this…

Quantitative Methods · Quantitative Biology 2020-12-25 Brian Cleary , Aviv Regev

The delimitation of biological species, i.e., deciding which individuals belong to the same species and whether and how many different species are represented in a data set, is key to the conservation of biodiversity. Much existing work…

Populations and Evolution · Quantitative Biology 2025-12-15 Gabriele d'Angella , Christian Hennig

Cloth changing person re-identification(Re-ID) can work under more complicated scenarios with higher security than normal Re-ID and biometric techniques and is therefore extremely valuable in applications. Meanwhile, higher flexibility in…

Computer Vision and Pattern Recognition · Computer Science 2022-10-10 Renjie Zhang , Yu Fang , Huaxin Song , Fangbin Wan , Yanwei Fu , Hirokazu Kato , Yang Wu

Crowd understanding has aroused the widespread interest in vision domain due to its important practical significance. Unfortunately, there is no effort to explore crowd understanding in multi-modal domain that bridges natural language and…

Computer Vision and Pattern Recognition · Computer Science 2022-06-17 Heqian Qiu , Hongliang Li , Taijin Zhao , Lanxiao Wang , Qingbo Wu , Fanman Meng

Omics technologies enable unbiased investigation of biological systems through massively parallel sequence acquisition or molecular measurements, bringing the life sciences into the era of Big Data. A central challenge posed by such omics…

Molecular Networks · Quantitative Biology 2014-11-04 Xiaoxi Dong , Anatoly Yambartsev , Stephen Ramsey , Lina Thomas , Natalia Shulzhenko , Andrey Morgun

Person re-identification (Re-ID) has achieved great success in the supervised scenario. However, it is difficult to directly transfer the supervised model to arbitrary unseen domains due to the model overfitting to the seen source domains.…

Computer Vision and Pattern Recognition · Computer Science 2022-06-14 Lei Qi , Lei Wang , Yinghuan Shi , Xin Geng

High throughput sequencing is a technology that allows for the generation of millions of reads of genomic data regarding a study of interest, and data from high throughput sequencing platforms are usually count compositions. Subsequent…

Quantitative Methods · Quantitative Biology 2017-04-07 Jia R. Wu , Jean M. Macklaim , Briana L. Genge , Gregory B. Gloor

Detecting predictive biomarkers from multi-omics data is important for precision medicine, to improve diagnostics of complex diseases and for better treatments. This needs substantial experimental efforts that are made difficult by the…

Quantitative Methods · Quantitative Biology 2021-06-08 Betül Güvenç Paltun , Samuel Kaski , Hiroshi Mamitsuka

This study presents a novel approach at the intersection of genomic analysis and artificial intelligence (AI) to predict viral mutations and assess the risks of future pandemics. Through comprehensive genomic analysis, genetic markers…

Other Quantitative Biology · Quantitative Biology 2023-09-29 Fadhil G. Al-Amran , Abbas M. Hezam , Salman Rawaf , Maitham G. Yousif

Genetic data obtained on population samples convey information about their evolutionary history. Inference methods can extract this information (at least partially) but they require sophisticated statistical techniques that have been made…

Mixup is a highly successful technique to improve generalization of neural networks by augmenting the training data with combinations of random pairs. Selective mixup is a family of methods that apply mixup to specific pairs, e.g. only…

Machine Learning · Computer Science 2023-06-06 Damien Teney , Jindong Wang , Ehsan Abbasnejad

Wildlife ReID involves utilizing visual technology to identify specific individuals of wild animals in different scenarios, holding significant importance for wildlife conservation, ecological research, and environmental monitoring.…

Computer Vision and Pattern Recognition · Computer Science 2024-10-28 Chenyue Li , Shuoyi Chen , Mang Ye

With the recent advances in DNA sequencing, it is now possible to have complete genomes of individuals sequenced and assembled. This rich and focused genotype information can be used to do different population-wide studies, now first time…

Data Structures and Algorithms · Computer Science 2011-09-08 Jouni Sirén , Niko Välimäki , Veli Mäkinen

Emergence is a phenomenon taken for granted in science but also still not well understood. We have developed a model of artificial genetic evolution intended to allow for emergence on genetic, population and social levels. We present the…

Populations and Evolution · Quantitative Biology 2015-05-19 Chris Marriott , Jobran Chebib

Mixup is a data augmentation method that generates new data points by mixing a pair of input data. While mixup generally improves the prediction performance, it sometimes degrades the performance. In this paper, we first identify the main…

Machine Learning · Computer Science 2022-01-10 Jy-yong Sohn , Liang Shang , Hongxu Chen , Jaekyun Moon , Dimitris Papailiopoulos , Kangwook Lee

Structural variation occurs in the genomes of individuals because of the different positions occupied by repetitive genome elements like endogenous retroviruses, or ERVs. The presence or absence of ERVs can be determined by identifying the…

Applications · Statistics 2017-01-05 David R. Hunter , Le Bao , Mary Poss

Modern DNA sequencing technologies enable geneticists to rapidly identify genetic variation among many human genomes. However, isolating the minority of variants underlying disease remains an important, yet formidable challenge for medical…

Genomics · Quantitative Biology 2015-06-15 Uma Paila , Brad Chapman , Rory Kirchner , Aaron Quinlan

We analyse a model consisting of a population of individuals which is subdivided into a finite set of demes, each of which has a fixed but differing number of individuals. The individuals can reproduce, die and migrate between the demes…

Populations and Evolution · Quantitative Biology 2014-08-20 George W A Constable , Alan J McKane

Subpopulation shift widely exists in many real-world machine learning applications, referring to the training and test distributions containing the same subpopulation groups but varying in subpopulation frequencies. Importance reweighting…

Machine Learning · Computer Science 2023-01-04 Zongbo Han , Zhipeng Liang , Fan Yang , Liu Liu , Lanqing Li , Yatao Bian , Peilin Zhao , Bingzhe Wu , Changqing Zhang , Jianhua Yao
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