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Motivated by the recently shown connection between self-attention and (kernel) principal component analysis (PCA), we revisit the fundamentals of PCA. Using the difference-of-convex (DC) framework, we present several novel formulations and…

Machine Learning · Computer Science 2025-10-22 Jan Quan , Johan Suykens , Panagiotis Patrinos

Principal component analysis (PCA) has been widely applied to dimensionality reduction and data pre-processing for different applications in engineering, biology and social science. Classical PCA and its variants seek for linear projections…

Machine Learning · Computer Science 2017-07-11 Xiaojun Chang , Feiping Nie , Yi Yang , Heng Huang

PyRQA is a software package that efficiently conducts recurrence quantification analysis (RQA) on time series consisting of more than one million data points. RQA is a method from non-linear time series analysis that quantifies the…

Distributed, Parallel, and Cluster Computing · Computer Science 2024-03-03 Tobias Rawald , Mike Sips , Norbert Marwan

Functional principal component analysis (FPCA) is an important technique for dimension reduction in functional data analysis (FDA). Classical FPCA method is based on the Karhunen-Lo\`{e}ve expansion, which assumes a linear structure of the…

Methodology · Statistics 2023-06-27 Rou Zhong , Chunming Zhang , Jingxiao Zhang

Spatial Independent Component Analysis (ICA) is an increasingly used data-driven method to analyze functional Magnetic Resonance Imaging (fMRI) data. To date, it has been used to extract meaningful patterns without prior information.…

Computer Vision and Pattern Recognition · Computer Science 2009-11-25 Gaël Varoquaux , Sepideh Sadaghiani , Jean Baptiste Poline , Bertrand Thirion

Canonical correlation analysis investigates linear relationships between two sets of variables, but often works poorly on modern data sets due to high-dimensionality and mixed data types such as continuous, binary and zero-inflated. To…

Methodology · Statistics 2021-04-01 Grace Yoon , Raymond J. Carroll , Irina Gaynanova

Independent component analysis (ICA) is a method for recovering statistically independent signals from observations of unknown linear combinations of the sources. Some of the most accurate ICA decomposition methods require searching for the…

Machine Learning · Statistics 2016-09-23 Matan Sela , Ron Kimmel

We present PyCARL, a PyNN-based common Python programming interface for hardware-software co-simulation of spiking neural network (SNN). Through PyCARL, we make the following two key contributions. First, we provide an interface of PyNN to…

Neural and Evolutionary Computing · Computer Science 2020-05-13 Adarsha Balaji , Prathyusha Adiraju , Hirak J. Kashyap , Anup Das , Jeffrey L. Krichmar , Nikil D. Dutt , Francky Catthoor

We propose a novel algorithm - Multifractal Cross-Correlation Analysis (MFCCA) - that constitutes a consistent extension of the Detrended Cross-Correlation Analysis (DCCA) and is able to properly identify and quantify subtle characteristics…

Data Analysis, Statistics and Probability · Physics 2014-02-25 Paweł Oświȩcimka , Stanisław Drożdż , Marcin Forczek , Stanisław Jadach , Jarosław Kwapień

Stimulation methods that utilise more than one stimulation frequency have been developed for steady-state visual evoked potential (SSVEP) brain-computer interfaces (BCIs) with the purpose of increasing the number of targets that can be…

Neurons and Cognition · Quantitative Biology 2021-08-12 Jing Mu , Ying Tan , David B. Grayden , Denny Oetomo

Understanding how the brain functions is one of the biggest challenges of our time. The analysis of experimentally recorded neural firing patterns (spike trains) plays a crucial role in addressing this problem. Here, the PySpike library is…

Data Analysis, Statistics and Probability · Physics 2016-07-12 Mario Mulansky , Thomas Kreuz

Spatial Independent Component Analysis (ICA) is an increasingly used data-driven method to analyze functional Magnetic Resonance Imaging (fMRI) data. To date, it has been used to extract sets of mutually correlated brain regions without…

Applications · Statistics 2011-02-08 G. Varoquaux , S. Sadaghiani , P. Pinel , A. Kleinschmidt , J. B. Poline , B. Thirion

Canonical correlation analysis is a classic well-known multivariate statistical method focusing on the relationships between two sets of variables. The visualisation of those relationships can be achieved by means of a biplot of the…

Methodology · Statistics 2026-04-02 Jan Graffelman

This paper proposes a deep learning-based approach for in-situ process monitoring that captures nonlinear relationships between in-control high-dimensional process signature signals and offline product quality data. Specifically, we…

Applications · Statistics 2025-09-25 Xiaoyang Song , Wenbo Sun , Metin Kayitmazbatir , Jionghua , Jin

Cross-modality retrieval encompasses retrieval tasks where the fetched items are of a different type than the search query, e.g., retrieving pictures relevant to a given text query. The state-of-the-art approach to cross-modality retrieval…

Information Retrieval · Computer Science 2018-04-17 Matthias Dorfer , Jan Schlüter , Andreu Vall , Filip Korzeniowski , Gerhard Widmer

Comparing the functional behavior of neural network models, whether it is a single network over time or two (or more networks) during or post-training, is an essential step in understanding what they are learning (and what they are not),…

Computer Vision and Pattern Recognition · Computer Science 2022-11-10 Xingjian Zhen , Zihang Meng , Rudrasis Chakraborty , Vikas Singh

In this article, a correlation metric $\kappa_C$ is proposed for the inference of the dynamical state of neuronal networks. $\kappa_C$ is computed from the scaling of the correlation length with the size of the observation region, which…

Disordered Systems and Neural Networks · Physics 2023-01-24 Eyisto J. Aguilar Trejo , Daniel A. Martin , Dulara De Zoysa , Zac Bowen , Tomas S. Grigera , Sergio A. Cannas , Wolfgang Losert , Dante R. Chialvo

We present an efficient stochastic algorithm (RSG+) for canonical correlation analysis (CCA) using a reparametrization of the projection matrices. We show how this reparametrization (into structured matrices), simple in hindsight, directly…

Machine Learning · Computer Science 2021-06-15 Zihang Meng , Rudrasis Chakraborty , Vikas Singh

Neural Networks are notoriously difficult to inspect. We introduce comgra, an open source python library for use with PyTorch. Comgra extracts data about the internal activations of a model and organizes it in a GUI (graphical user…

Machine Learning · Computer Science 2024-08-01 Florian Dietz , Sophie Fellenz , Dietrich Klakow , Marius Kloft

Calcium imaging is an essential tool to study the activity of neuronal populations. However, the high level of background fluorescence in images hinders the accurate identification of neurons and the extraction of neuronal activities. While…

Image and Video Processing · Electrical Eng. & Systems 2021-08-05 Seungjae Han , Eun-Seo Cho , Inkyu Park , Kijung Shin , Young-Gyu Yoon
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