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Understanding the population structure and patterns of gene flow within species is of fundamental importance to the study of evolution. In the fields of population and evolutionary genetics, measures of genetic differentiation are commonly…

Populations and Evolution · Quantitative Biology 2016-09-27 Lisa Sundqvist , Kevin Keenan , Martin Zackrisson , Paulo Prodöhl , David Kleinhans

State-of-the-art crowd counting models follow an encoder-decoder approach. Images are first processed by the encoder to extract features. Then, to account for perspective distortion, the highest-level feature map is fed to extra components…

Computer Vision and Pattern Recognition · Computer Science 2022-10-24 Yiming Ma , Victor Sanchez , Tanaya Guha

Statistical analysis of DNA mixtures is known to pose computational challenges due to the enormous state space of possible DNA profiles. We propose a Bayesian network representation for genotypes, allowing computations to be performed…

Methodology · Statistics 2014-02-21 Therese Graversen , Steffen Lauritzen

The proliferation of science and technology has led to the prevalence of voluminous data sets that are distributed across multiple machines. It is an established fact that conventional statistical methodologies may be unfeasible in the…

Statistics Theory · Mathematics 2023-10-24 Lu Yan , Jiang Hu

The stochastic block model (SBM) is a fundamental tool for community detection in networks, yet the finite-sample performance of inference methods remains underexplored. We evaluate key algorithms-spectral methods, variational inference,…

Social and Information Networks · Computer Science 2024-12-06 Tianjun Ke , Zhiyu Xu

Forecasting on sparse multivariate time series (MTS) aims to model the predictors of future values of time series given their incomplete past, which is important for many emerging applications. However, most existing methods process MTS's…

Machine Learning · Computer Science 2021-03-04 Yinjun Wu , Jingchao Ni , Wei Cheng , Bo Zong , Dongjin Song , Zhengzhang Chen , Yanchi Liu , Xuchao Zhang , Haifeng Chen , Susan Davidson

Inferring concerted changes among biological traits along an evolutionary history remains an important yet challenging problem. Besides adjusting for spurious correlation induced from the shared history, the task also requires sufficient…

The rapid growth of high-dimensional datasets across various scientific domains has created a pressing need for new statistical methods to compare distributions supported on their underlying structures. Assessing similarity between datasets…

Statistics Theory · Mathematics 2025-11-27 Hongrui Chen , Rong Ma

Although a generalized spike population model has been actively studied in random matrix theory, its application to real data has been rarely explored. We find that most methods for determining the number of spikes based on the Johnstone's…

Methodology · Statistics 2018-05-01 Hyo Young Choi , J. S. Marron

A generative modeling framework is proposed that combines diffusion models and manifold learning to efficiently sample data densities on manifolds. The approach utilizes Diffusion Maps to uncover possible low-dimensional underlying (latent)…

Machine Learning · Computer Science 2025-04-22 Dimitris G. Giovanis , Ellis Crabtree , Roger G. Ghanem , Ioannis G. Kevrekidis

Federated or multi-site studies have distinct advantages over single-site studies, including increased generalizability, the ability to study underrepresented populations, and the opportunity to study rare exposures and outcomes. However,…

Machine Learning · Statistics 2023-09-25 Larry Han , Zhu Shen , Jose Zubizarreta

With appropriately chosen sampling probabilities, sampling-based random projection can be used to implement large-scale statistical methods, substantially reducing computational cost while maintaining low statistical error. However,…

Machine Learning · Statistics 2026-01-13 Yifan Chen , Yun Yang

This paper proposes a new model-based approach to small area estimation of general finite-population parameters based on grouped data or frequency data, which is often available from sample surveys. Grouped data contains information on…

Methodology · Statistics 2019-09-20 Yuki Kawakubo , Genya Kobayashi

Image restoration aims to recover high-quality images from their corrupted counterparts. Many existing methods primarily focus on the spatial domain, neglecting the understanding of frequency variations and ignoring the impact of implicit…

Computer Vision and Pattern Recognition · Computer Science 2024-07-15 Hu Gao , Depeng Dang

Step selection functions (SSFs) are flexible models to jointly describe animals' movement and habitat preferences. Their popularity has grown rapidly and extensions have been developed to increase their utility, including various…

Quantitative Methods · Quantitative Biology 2023-08-31 Théo Michelot , Natasha J. Klappstein , Jonathan R. Potts , John Fieberg

Because biological processes can make different loci have different evolutionary histories, species tree estimation requires multiple loci from across the genome. While many processes can result in discord between gene trees and species…

Quantitative Methods · Quantitative Biology 2018-03-13 Md. Shamsuzzoha Bayzid , Siavash Mirarab , Bastien Boussau , Tandy Warnow

As a living information and communications system, the genome encodes patterns in single nucleotide polymorphisms (SNPs) reflecting human adaption that optimizes population survival in differing environments. This paper mathematically…

Populations and Evolution · Quantitative Biology 2018-03-22 James Lindesay , Tshela E. Mason , William Hercules , Georgia M. Dunston

In crowd counting datasets, people appear at different scales, depending on their distance from the camera. To address this issue, we propose a novel multi-branch scale-aware attention network that exploits the hierarchical structure of…

Computer Vision and Pattern Recognition · Computer Science 2019-07-29 Rahul Rama Varior , Bing Shuai , Joseph Tighe , Davide Modolo

Genome-wide association studies (GWAS) have identified thousands of genetic variants associated with human traits or diseases in the past decade. Nevertheless, much of the heritability of many traits is still unaccounted for. Commonly used…

Methodology · Statistics 2022-04-22 Qiaolan Deng , Chi Song , Shili Lin

With the advance of large language models (LLMs), LLMs have been utilized for the various tasks. However, the issues of variability and reproducibility of results from each trial of LLMs have been largely overlooked in existing literature…

Computation and Language · Computer Science 2025-05-08 Junichiro Niimi