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Innovations like protein diffusion have enabled significant progress in de novo protein design, which is a vital topic in life science. These methods typically depend on protein structure encoders to model residue backbone frames, where…

Computational Engineering, Finance, and Science · Computer Science 2023-10-19 Weian Mao , Muzhi Zhu , Zheng Sun , Shuaike Shen , Lin Yuanbo Wu , Hao Chen , Chunhua Shen

Majority voting is a simple mathematical function that returns the value that appears most often in a set. As a popular decision fusion technique, the majority voting function (MVF) finds applications in resolving conflicts, where a number…

Machine Learning · Statistics 2023-09-19 Sina Aeeneh , Nikola Zlatanov , Jiangshan Yu

Low-rank optimization has emerged as a promising direction in training large language models (LLMs) to improve running time and reduce the memory usage of adaptive optimizers by constraining learning to a lower-dimensional space. Prior work…

Machine Learning · Computer Science 2025-10-09 Ionut-Vlad Modoranu , Mher Safaryan , Erik Schultheis , Max Ryabinin , Artem Chumachenko , Dan Alistarh

A new method to represent and approximate rotation matrices is introduced. The method represents approximations of a rotation matrix $Q$ with linearithmic complexity, i.e. with $\frac{1}{2}n\lg(n)$ rotations over pairs of coordinates,…

Machine Learning · Computer Science 2014-04-30 Michael Mathieu , Yann LeCun

In this paper, we present FPT-algorithms for special cases of the shortest lattice vector, integer linear programming, and simplex width computation problems, when matrices included in the problems' formulations are near square. The…

Optimization and Control · Mathematics 2022-11-30 D. V. Gribanov , D. S. Malyshev , P. M. Pardalos , S. I. Veselov

Molecular docking is critical to structure-based virtual screening, yet the throughput of such workflows is limited by the expensive optimization of scoring functions involved in most docking algorithms. We explore how machine learning can…

Biomolecules · Quantitative Biology 2024-09-04 Bowen Jing , Tommi Jaakkola , Bonnie Berger

The task of estimating a matrix given a sample of observed entries is known as the \emph{matrix completion problem}. Most works on matrix completion have focused on recovering an unknown real-valued low-rank matrix from a random sample of…

Statistics Theory · Mathematics 2014-08-27 Olga Klopp , Jean Lafond , Eric Moulines , Joseph Salmon

In this article, we propose a quasi-Newton method for unconstrained set optimization problems to find its weakly minimal solutions with respect to lower set-less ordering. The set-valued objective mapping under consideration is given by a…

Optimization and Control · Mathematics 2025-01-10 Debdas Ghosh , Anshika , Jen-Chih Yao , Xiaopeng Zhao

This work presents a novel matrix-based method for constructing an approximation Hessian using only function evaluations. The method requires less computational power than interpolation-based methods and is easy to implement in matrix-based…

Numerical Analysis · Mathematics 2023-04-07 W. Hare , G. Jarry-Bolduc , C. Planiden

In the past decade, matrix factorization has been extensively researched and has become one of the most popular techniques for personalized recommendations. Nevertheless, the dot product adopted in matrix factorization based recommender…

Information Retrieval · Computer Science 2018-06-05 Shuai Zhang , Lina Yao , Yi Tay , Xiwei Xu , Xiang Zhang , Liming Zhu

A framework is presented for fitting inverse problem models via variational Bayes approximations. This methodology guarantees flexibility to statistical model specification for a broad range of applications, good accuracy and reduced model…

Methodology · Statistics 2024-09-05 Luca Maestrini , Robert G. Aykroyd , Matt P. Wand

Control barrier functions (CBFs) provide an effective framework for enforcing safety in dynamical systems with scalar constraints. However, many safety constraints are more naturally expressed as matrix-valued conditions, such as positive…

Optimization and Control · Mathematics 2026-04-07 Samuel G. Gessow , Pio Ong , Aaron D. Ames , Brett T. Lopez

We present Submatrix-wise Vector Embedding Learner (Swivel), a method for generating low-dimensional feature embeddings from a feature co-occurrence matrix. Swivel performs approximate factorization of the point-wise mutual information…

Computation and Language · Computer Science 2016-02-09 Noam Shazeer , Ryan Doherty , Colin Evans , Chris Waterson

Vertical federated learning (VFL) has attracted greater and greater interest since it enables multiple parties possessing non-overlapping features to strengthen their machine learning models without disclosing their private data and model…

Machine Learning · Computer Science 2022-09-07 Changxin Liu , Zhenan Fan , Zirui Zhou , Yang Shi , Jian Pei , Lingyang Chu , Yong Zhang

We show how rational function approximations to the logarithm, such as $\log z \approx (z^2 - 1)/(z^2 + 6z + 1)$, can be turned into fast algorithms for approximating the determinant of a very large matrix. We empirically demonstrate that…

Data Structures and Algorithms · Computer Science 2024-05-07 Thomas Colthurst , Srinivas Vasudevan , James Lottes , Brian Patton

Recent work on approximate linear programming (ALP) techniques for first-order Markov Decision Processes (FOMDPs) represents the value function linearly w.r.t. a set of first-order basis functions and uses linear programming techniques to…

Artificial Intelligence · Computer Science 2012-07-02 Scott Sanner , Craig Boutilier

In this paper, a general algorithm is proposed for rate analysis and code design of linear index coding problems. Specifically a solution for minimum rank matrix completion problem over finite fields representing the linear index coding…

Information Theory · Computer Science 2014-08-14 Homa Esfahanizadeh , Farshad Lahouti , Babak Hassibi

The explosive growth of vector search applications demands efficient handling of combined vector similarity and attribute filtering; a challenge where current approaches force an unsatisfying choice between performance and accuracy. We…

Databases · Computer Science 2025-06-23 Alireza Heidari , Wei Zhang

The efficiency of graph-based semi-supervised algorithms depends on the graph of instances on which they are applied. The instances are often in a vectorial form before a graph linking them is built. The construction of the graph relies on…

Machine Learning · Computer Science 2016-02-19 Pauline Wauquier , Mikaela Keller

Variational inference with normalizing flows (NFs) is an increasingly popular alternative to MCMC methods. In particular, NFs based on coupling layers (Real NVPs) are frequently used due to their good empirical performance. In theory,…

Machine Learning · Statistics 2024-02-27 Daniel Andrade
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