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From cytoskeletal networks to tissues, many biological systems behave as active materials. Their composition and stress-generation is affected by chemical reaction networks. In such systems, the coupling between mechanics and chemistry…

Biological Physics · Physics 2024-09-25 Luca Barberi , Karsten Kruse

Using molecular dynamics simulations we investigate the structure of a system of particles interacting through a continuous core-softened interparticle potential. We found for the translational order parameter, t, a local maximum at a…

Soft Condensed Matter · Physics 2007-11-28 Alan B. de Oliveira , Paulo A. Netz , Thiago Colla , Marcia C. Barbosa

We examine the structural and dynamic properties of confined binary hard-sphere mixtures designed to mimic realizable colloidal thin films. Using computer simulations, governed by either Newtonian or overdamped Langevin dynamics, together…

Soft Condensed Matter · Physics 2015-05-01 Jonathan A. Bollinger , Avni Jain , James Carmer , Thomas M. Truskett

Consider a system of particles performing nearest neighbor random walks on the lattice $\ZZ$ under hard--core interaction. The rate for a jump over a given bond is direction--independent and the inverse of the jump rates are i.i.d. random…

Probability · Mathematics 2007-09-05 A. Faggionato , M. Jara , C. Landim

This paper is the fourth in a series devoted to identifying and explaining the properties of strongly correlating liquids, i.e., liquids where virial and potential energy correlate better than 90% in their thermal equilibrium fluctuations…

Soft Condensed Matter · Physics 2013-01-29 Nicoletta Gnan , Thomas B. Schrøder , Ulf R. Pedersen , Nicholas P. Bailey , Jeppe C. Dyre

Relative permeability is commonly used to model immiscible fluid flow through porous materials. In this work we derive the relative permeability relationship from conservation of energy, assuming that the system to be non-ergodic at large…

While the interactions between water molecules are dominated by strongly directional hydrogen bonds (HBs), it was recently proposed that relatively weak, isotropic van der Waals (vdW) forces are essential for understanding the properties of…

Computational Physics · Physics 2016-07-07 Tobias Morawietz , Andreas Singraber , Christoph Dellago , Jörg Behler

We analyze one thousand independent equilibrium trajectories of a system of 155 Lennard Jones particles to separate in a model-free approach the role of temperature and the role of the explored potential energy landscape basin depth in the…

Disordered Systems and Neural Networks · Physics 2009-11-11 Emilia La Nave , Srikanth Sastry , Francesco Sciortino

We address a system of equations modeling a compressible fluid interacting with an elastic body in dimension three. We prove the local existence and uniqueness of a strong solution when the initial velocity belongs to the space…

Analysis of PDEs · Mathematics 2026-01-01 Igor Kukavica , Linfeng Li , Amjad Tuffaha

Water is an unique material with a long list of thermodynamic, dynamic and structural anomalies, which are usually attributed to the competition between two characteristic length scales in the intermolecular interaction. It has been argued…

Statistical Mechanics · Physics 2021-06-25 Murilo S. Marques , Vinicius Fonseca Hernandes , Enrique Lomba , J. Rafael Bordin

Elucidating the nature of the glass transition has been the holy grail of condensed matter physics and statistical mechanics for several decades. A phenomenological aspect that makes glass formation a conceptually formidable problem is that…

Soft Condensed Matter · Physics 2016-08-11 Shreyas Gokhale , K. Hima Nagamanasa , A. K. Sood , Rajesh Ganapathy

Chaotic transitions in inertial fluids typically proceed through a direct energy cascade from large to small scales. In contrast, active systems, composed of self propelled units, inject energy at microscopic scales and therefore exhibit an…

Soft Condensed Matter · Physics 2026-04-14 Partha Sarathi Mondal , Tamas Vicsek , Shradha Mishra

This series of papers is devoted to identifying and explaining the properties of strongly correlating liquids, i.e., liquids with more than 90% correlation between their virial W and potential energy U fluctuations in the NVT ensemble.…

Soft Condensed Matter · Physics 2012-03-27 Thomas B. Schrøder , Nicoletta Gnan , Ulf R. Pedersen , Nicholas P. Bailey , Jeppe C. Dyre

The interplay of superconductivity and disorder generates a wealth of complex phenomena. In particular, the peculiar structure of diffusive electronic wavefunctions is predicted to increase the superconducting critical temperature in some…

Superconductivity · Physics 2023-05-17 Mathieu Lizée , Matthias Stosiek , Christophe Brun , Igor Burmistrov , Tristan Cren

In the present work, the low-lying structures of 20 different-sized water clusters are extensively searched using the artificial bee colony algorithm with TIP4P classical force field. To obtain the lowest equilibrium geometries, we select…

Atomic and Molecular Clusters · Physics 2024-11-04 Vishwa K. Bhatt , Sajeev S. Chacko , Nitinkumar M. Bijewar , Balasaheb J. Nagare

n this work we consider a multilayered heat-wave system where a 3-D heat equation is coupled with a 3-D wave equation via a 2-D interface whose dynamics is described by a 2-D wave equation. This system can be viewed as a simplification of a…

Analysis of PDEs · Mathematics 2019-10-22 George Avalos , Pelin G. Geredeli , Boris Muha

In the last decade, computational studies of liquid water have mostly concentrated on ground state properties. However recent spectroscopic measurements have been used to infer the structure of water, and the interpretation of optical and…

Materials Science · Physics 2016-08-31 David Prendergast , Jeffrey C. Grossman , Giulia Galli

We discuss a possible form for a theory akin to local density functional theory, but able to produce van der Waals energies in a natural fashion. The usual Local Density Approximation (LDA) for the exchange and correlation energy $E_{xc}$…

Soft Condensed Matter · Physics 2007-05-23 John F. Dobson

We employ classical molecular dynamics simulations to investigate the molecular-level structure of water during the isothermal compression of hexagonal ice (I$h$) and low-density amorphous (LDA) ice at low temperatures. In both cases, the…

Chemical Physics · Physics 2018-07-11 Fausto Martelli , Nicolas Giovambattista , Salvatore Torquato , Roberto Car

The structure and dynamics of the water/vapor interface is revisited by means of path-integral and second-generation Car-Parrinello ab-initio molecular dynamics simulations in conjunction with an instantaneous surface definition [A. P.…