Related papers: Leaf-to-leaf distances in Catalan trees

The tree-depth is a parameter introduced under several names as a measure of sparsity of a graph. We compute asymptotic values of the tree-depth of random graphs. For dense graphs, p>> 1/n, the tree-depth of a random graph G is a.a.s.…

Given two rooted, labeled trees $P$ and $T$ the tree path subsequence problem is to determine which paths in $P$ are subsequences of which paths in $T$. Here a path begins at the root and ends at a leaf. In this paper we propose this…

The Catalan number has a lot of interpretations and one of them is the number of Dyck paths. A Dyck path is a lattice path from $(0,0)$ to $(n,n)$ which is below the diagonal line $y=x$. One way to generalize the definition of Dyck path is…

We give a complete characterization of bipartite graphs having tree-like Galois lattices. We prove that the poset obtained by deleting bottom and top elements from the Galois lattice of a bipartite graph is tree-like if and only if the…

We prove consistency of four different approaches to formalizing the idea of minimum average edge-length in a path linking some infinite subset of points of a Poisson process. The approaches are (i) shortest path from origin through some…

Phylogenetic networks which are, as opposed to trees, suitable to describe processes like hybridization and horizontal gene transfer, play a substantial role in evolutionary research. However, while non-treelike events need to be taken into…

In a recent paper on 'Estimating Species Trees from Unrooted Gene Trees' Liu and Yu observe that the distance matrix on the underlying taxon set, which is built up from expected internode distances on gene trees under the multispecies…

Phylogenetic networks generalize phylogenetic trees, and have been introduced in order to describe evolution in the case of transfer of genetic material between coexisting species. There are many classes of phylogenetic networks, which can…

This is a survey article on trees, with a modest number of proofs to give a flavor of the way these topologies can be efficiently handled. Trees are defined in set-theorist fashion as partially ordered sets in which the elements below each…

We introduce a model for the evolution of species triggered by generation of novel features and exhaustive combination with other available traits. Under the assumption that innovations are rare, we obtain a bursty branching process of…

We investigate the tree gonality of a genus-$g$ metric graph, defined as the minimum degree of a tropical morphism from any tropical modification of the metric graph to a metric tree. We give a combinatorial constructive proof that this…

We study the distribution of the number of (non-backtracking) periodic walks on large regular graphs. We propose a formula for the ratio between the variance of the number of $t$-periodic walks and its mean, when the cardinality of the…

For fixed $t\ge 2$, we consider the class of representations of $1$ as sum of unit fractions whose denominators are powers of $t$ or equivalently the class of canonical compact $t$-ary Huffman codes or equivalently rooted $t$-ary plane…

We present analytical results for the distribution of first-passage (FP) times of random walks (RWs) on random regular graphs that consist of $N$ nodes of degree $c \ge 3$. Starting from a random initial node at time $t=0$, at each time…

This paper will show when a rooted path tree of a finite directed rooted graph has only finitely many orbits under the action of its undirected automorphism group (i.e. when it is cocompact). This will allow us to specify which trees are…

A Yule tree is the result of a branching process with constant birth and death rates. Such a process serves as an instructive null model of many empirical systems, for instance, the evolution of species leading to a phylogenetic tree.…

Merge trees are a common topological descriptor for data with a hierarchical component, such as terrains and scalar fields. The interleaving distance, in turn, is a common distance for comparing merge trees. However, the interleaving…

Accessibility percolation is a new type of percolation problem inspired by evolutionary biology. To each vertex of a graph a random number is assigned and a path through the graph is called accessible if all numbers along the path are in…

We study graphs on $n$ vertices which have $2n-2$ edges and no proper induced subgraphs of minimum degree $3$. Erd\H{o}s, Faudree, Gy\'arf\'as, and Schelp conjectured that such graphs always have cycles of lengths $3,4,5,\dots, C(n)$ for…

$\Lambda$-coalescents model genealogies of samples of individuals from a large population by means of a family tree whose branches have lengths. The tree's leaves represent the individuals, and the lengths of the adjacent edges indicate the…