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Related papers: Data management to support reproducible research

200 papers

As software systems increase in complexity, conventional monitoring methods struggle to provide a comprehensive overview or identify performance issues, often missing unexpected problems. Observability, however, offers a holistic approach,…

Distributed, Parallel, and Cluster Computing · Computer Science 2024-08-29 Bartosz Balis , Konrad Czerepak , Albert Kuzma , Jan Meizner , Lukasz Wronski

The wealth of Social Big Data (SBD) represents a unique opportunity for organisations to obtain the excessive use of such data abundance to increase their revenues. Hence, there is an imperative need to capture, load, store, process,…

Since the turn of the millennium, computational modelling of biological systems has evolved remarkably and sees matured use spanning basic and clinical research. While the topic of the peri-millennial debate about the virtues and…

Quantitative Methods · Quantitative Biology 2025-08-05 Axel Loewe , Peter J. Hunter , Peter Kohl

The organizations and researchers producing research software face a common problem of making their software sustainable beyond funding provided by a single research project. This is addressed by research software engineers through building…

Software Engineering · Computer Science 2024-06-05 Deekshitha , Rena Bakhshi , Jason Maassen , Carlos Martinez Ortiz , Rob van Nieuwpoort , Slinger Jansen

Data sharing is fundamental to scientific progress, enhancing transparency, reproducibility, and innovation across disciplines. Despite its growing significance, the variability of data-sharing practices across research fields remains…

Digital Libraries · Computer Science 2025-02-04 Puyu Yang , Giovanni Colavizza

SDN divides the networking landscape into 2 parts: control and data plane. SDN expanded it's foot mark starting with OpenFlow based highly flexible control plane and rigid data plane. Innovation and improvement in hardware design and…

Networking and Internet Architecture · Computer Science 2024-09-05 Debobroto Das Robin , Javed I. Khan

New technologies have led to vast troves of large and complex datasets across many scientific domains and industries. People routinely use machine learning techniques to not only process, visualize, and make predictions from this big data,…

Machine Learning · Statistics 2023-08-04 Genevera I. Allen , Luqin Gan , Lili Zheng

Human-robot interactive decision-making is increasingly becoming ubiquitous, and trust is an influential factor in determining the reliance on autonomy. However, it is not reasonable to trust systems that are beyond our comprehension, and…

Machine Learning · Computer Science 2021-08-16 Daoming Lyu , Fangkai Yang , Hugh Kwon , Wen Dong , Levent Yilmaz , Bo Liu

Recent advances in deep generative models have greatly expanded the potential to create realistic synthetic health datasets. These synthetic datasets aim to preserve the characteristics, patterns, and overall scientific conclusions derived…

Machine Learning · Computer Science 2024-07-04 Jennifer A Bartell , Sander Boisen Valentin , Anders Krogh , Henning Langberg , Martin Bøgsted

In modern materials science, effective and high-volume data management across leading-edge experimental facilities and world-class supercomputers is indispensable for cutting-edge research. However, existing integrated systems that handle…

In the data science courses at the University of British Columbia, we define data science as the study, development and practice of reproducible and auditable processes to obtain insight from data. While reproducibility is core to our…

Computers and Society · Computer Science 2022-07-26 Joel Ostblom , Tiffany Timbers

As Large Language Models (LLMs) become integral to scientific workflows, concerns over the confidentiality and ethical handling of confidential data have emerged. This paper explores data exposure risks through LLM-powered scientific tools,…

Human-Computer Interaction · Computer Science 2025-04-15 Yashothara Shanmugarasa , Shidong Pan , Ming Ding , Dehai Zhao , Thierry Rakotoarivelo

Nowadays, many scientific areas share the same need of being able to deal with massive and distributed datasets and to perform on them complex knowledge extraction tasks. This simple consideration is behind the international efforts to…

Reproducibility of research is essential for science. However, in the way modern computational biology research is done, it is easy to lose track of small, but extremely critical, details. Key details, such as the specific version of a…

We compare two distinct approaches for querying data in the context of the life sciences. The first approach utilizes conventional databases to store the data and intuitive form-based interfaces to facilitate easy querying of the data.…

Information Retrieval · Computer Science 2012-10-03 Amir H. Asiaee , Prashant Doshi , Todd Minning , Satya Sahoo , Priti Parikh , Amit Sheth , Rick L. Tarleton

World Models have emerged as a powerful paradigm for learning compact, predictive representations of environment dynamics, enabling agents to reason, plan, and generalize beyond direct experience. Despite recent interest in World Models,…

Artificial Intelligence · Computer Science 2026-02-18 Lucas Maes , Quentin Le Lidec , Dan Haramati , Nassim Massaudi , Damien Scieur , Yann LeCun , Randall Balestriero

The implementation of robust, stable, and user-centered data analytics and machine learning models is confronted by numerous challenges in production and manufacturing. Therefore, a systematic approach is required to develop, evaluate, and…

Software Engineering · Computer Science 2020-08-03 Shailesh Tripathi , David Muhr , Brunner Manuel , Frank Emmert-Streib , Herbert Jodlbauer , Matthias Dehmer

Data Science is a multidisciplinary field that plays a crucial role in extracting valuable insights and knowledge from large and intricate datasets. Within the realm of Data Science, two fundamental components are Information Theory (IT)…

Data Analysis, Statistics and Probability · Physics 2024-12-31 Shahid Nawaz , Muhammad Saleem , F. V. Kusmartsev , Dalaver H. Anjum

Critical goals of scientific computing are to increase scientific rigor, reproducibility, and transparency while keeping up with ever-increasing computational demands. This work presents an integrated framework well-suited for data…

Distributed, Parallel, and Cluster Computing · Computer Science 2023-10-13 Paul Nuyujukian

Scientific Machine Learning (SciML) is a recently emerged research field which combines physics-based and data-driven models for the numerical approximation of differential problems. Physics-based models rely on the physical understanding…

Numerical Analysis · Mathematics 2025-04-04 Alfio Quarteroni , Paola Gervasio , Francesco Regazzoni
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