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The redundancy principle provides the framework to study how rare events are made possible with probability 1 in accelerated time, by making many copies of similar random searchers. But what is $n$ large? To estimate large $n$ with respect…

Soft Condensed Matter · Physics 2024-07-31 Fred Paquin-Lefebvre , Suney Toste , David Holcman

We study the target searching on the DNA for proteins in the presence of non-constant drift and non-Gaussian $\alpha$-stable L\'evy fluctuations. The target searching is realized by the facilitated diffusion process. The existing works are…

Statistical Mechanics · Physics 2019-03-27 Xi Chen , Xiujun Cheng , Yanmei Kang , Jinqiao Duan

We consider a stochastic individual based model where each predator searches during a random time and then manipulates its prey or rests. The time distributions may be non-exponential. An age structure allows to describe these interactions…

Dynamical Systems · Mathematics 2021-03-31 Vincent Bansaye , Bertand Cloez

Models of population growth and extinction are an increasingly popular subject of study. However, consequences of stochasticity and noise in shaping distributions and outcomes are not sufficiently explored. Here we consider a distributed…

Statistical Mechanics · Physics 2020-11-11 Bertrand Ottino-Löffler , Mehran Kardar

A variety of systems in physics, chemistry, biology, and psychology are modeled in terms of diffusing "searchers" looking for "targets." Examples range from gene regulation, to cell sensing, to human decision-making. A commonly studied…

Probability · Mathematics 2022-08-24 Samantha Linn , Sean D Lawley

We study the dynamics of a single diffusing particle (a "man") with diffusivity $D_M$ that is attacked by another diffusing particle (a "mosquito") with fixed diffusivity $D_m$. Each time the mosquito meets and bites the man, the…

Statistical Mechanics · Physics 2014-11-11 S. Redner , O. Bénichou

A stochastic birth-death competition model for particles with excluded volume is proposed. The particles move, reproduce, and die on a regular lattice. While the death rate is constant, the birth rate is spatially nonlocal and implements…

Biological Physics · Physics 2017-06-29 Nagi Khalil , Cristóbal López , Emilio Hernández-García

The iterative and stochastic nature of diffusion models enables test-time scaling, whereby spending additional compute during denoising generates higher-fidelity samples. Increasing the number of denoising steps is the primary scaling axis,…

Machine Learning · Computer Science 2025-09-09 Vignav Ramesh , Morteza Mardani

The logistic birth and death process is perhaps the simplest stochastic population model that has both density-dependent reproduction, and a phase transition, and a lot can be learned about the process by studying its extinction time,…

Probability · Mathematics 2023-06-22 Eric Foxall

Competition between species and genotypes is a dominant factor in a variety of ecological and evolutionary processes. Biological dynamics are typically highly stochastic, and therefore, analyzing a competitive system requires accounting for…

Populations and Evolution · Quantitative Biology 2025-01-09 Ori Turkia , Nadav M. Shnerb

We study an individual-based model in which two spatially-distributed species, characterized by different diffusivities, compete for resources. We consider three different ecological settings. In the first, diffusing faster has a cost in…

Populations and Evolution · Quantitative Biology 2016-01-27 Simone Pigolotti , Roberto Benzi

Adapting a pretrained diffusion model to new objectives at inference time remains an open problem in generative modeling. Existing steering methods suffer from inaccurate value estimation, especially at high noise levels, which biases…

Machine Learning · Computer Science 2025-06-27 Vineet Jain , Kusha Sareen , Mohammad Pedramfar , Siamak Ravanbakhsh

Evolutionary Algorithms are naturally inspired approximation optimisation algorithms that usually interfere with science problems when common mathematical methods are unable to provide a good solution or finding the exact solution requires…

Artificial Intelligence · Computer Science 2021-02-03 Mohammed ElKomy

Frequency dependent selection and demographic fluctuations play important roles in evolutionary and ecological processes. Under frequency dependent selection, the average fitness of the population may increase or decrease based on…

Populations and Evolution · Quantitative Biology 2015-06-23 Weini Huang , Christoph Hauert , Arne Traulsen

In this paper, we consider a two-player two-strategy game with random payoffs in a population subdivided into $d$ demes, each containing $N$ individuals at the beginning of any given generation and experiencing local extinction and…

Populations and Evolution · Quantitative Biology 2023-11-02 Dhaker Kroumi , Sabin Lessard

We review recent results obtained from simple individual-based models of biological competition in which birth and death rates of an organism depend on the presence of other competing organisms close to it. In addition the individuals…

Populations and Evolution · Quantitative Biology 2015-03-03 Emilio Hernandez-Garcia , Els Heinsalu , Cristobal Lopez

We determine the full distribution and moments of the first passage time for a wide class of stochastic search processes in the limit of frequent stochastic resetting. Our results apply to any system whose short-time behavior of the search…

Statistical Mechanics · Physics 2023-02-22 Samantha Linn , Sean D Lawley

We investigate the search of a target with a given spatial distribution in a finite one-dimensional domain. The searcher follows Brownian dynamics and is always reset to its initial position when reaching the boundaries of the domain…

Statistical Mechanics · Physics 2026-02-06 Gregorio García-Valladares , Antonio Prados , Alessandro Manacorda , Carlos A. Plata

How should dispersal strategies be chosen to increase the likelihood of survival of a species? We obtain the answer for the spatially extended versions of three well-known models of two competing species with unequal diffusivities. Though…

Populations and Evolution · Quantitative Biology 2020-07-08 Tapas Singha , Prasad Perlekar , Mustansir Barma

Diffusive search for a static target is a common problem in statistical physics with numerous applications in chemistry and biology. We look at this problem from a different perspective and investigate the statistics of encounters between…

Statistical Mechanics · Physics 2023-10-17 Denis S. Grebenkov