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This publication serves as an overview of clique topology -- a novel matrix analysis technique used to extract structural features from neural activity data that contains hidden nonlinearities. We highlight work done by Gusti et al. which…

Neurons and Cognition · Quantitative Biology 2016-08-12 David Cox

Detecting meaningful structure in neural activity and connectivity data is challenging in the presence of hidden nonlinearities, where traditional eigenvalue-based methods may be misleading. We introduce a novel approach to matrix analysis,…

Neurons and Cognition · Quantitative Biology 2015-11-24 Chad Giusti , Eva Pastalkova , Carina Curto , Vladimir Itskov

We propose the n-clique network as a powerful tool for understanding global structures of combined highly-interconnected subgraphs, and provide theoretical predictions for statistical properties of the n-clique networks embedded in a…

Physics and Society · Physics 2009-11-13 Kazuhiro Takemoto , Chikoo Oosawa , Tatsuya Akutsu

Motivated by an approach to visualization of high dimensional statistical data given in Hurley and Oldford (2011), this work examines the clique structure of $J_n(m, m-1)$ Johnson graphs. Cliques and maximal cliques are characterized and…

Combinatorics · Mathematics 2022-08-29 Pavel Shuldiner , R. Wayne Oldford

We introduce Clique Matrices as an alternative representation of undirected graphs, being a generalisation of the incidence matrix representation. Here we use clique matrices to decompose a graph into a set of possibly overlapping clusters,…

Discrete Mathematics · Computer Science 2012-06-18 David Barber

Computational topology is a vibrant contemporary subfield and this article integrates knot theory and mathematical visualization. Previous work on computer graphics developed a sequence of smooth knots that were shown to converge point wise…

Geometric Topology · Mathematics 2016-03-29 J. Li , T. J. Peters , K. E. Jordan , P. Zaffetti

Modern applications of algebraic topology to point cloud data analysis have motivated active investigation of combinatorial clique complexes -- high-dimensional extensions of combinatorial graphs. We show that meaningful invariants of such…

Algebraic Topology · Mathematics 2014-10-29 Gregory Henselman , Paweł Dłotko

An abundance of real-world problems manifest as covering edges and/or vertices of a graph with cliques that are optimized for some objectives. We consider different structural parameters of graph, and design fixed-parameter tractable…

Data Structures and Algorithms · Computer Science 2022-08-29 Ahammed Ullah

Encoding brain regions and their connections as a network of nodes and edges captures many of the possible paths along which information can be transmitted as humans process and perform complex behaviors. Because cognitive processes involve…

Neurons and Cognition · Quantitative Biology 2016-12-21 Ann Sizemore , Chad Giusti , Ari Kahn , Richard F. Betzel , Danielle S. Bassett

In 1966, Erd\H{o}s, Goodman, and P\'{o}sa showed that if $G$ is an $n$-vertex graph, then at most $\lfloor n^2/4 \rfloor$ cliques of $G$ are needed to cover the edges of $G$, and the bound is best possible as witnessed by the balanced…

Combinatorics · Mathematics 2024-12-24 József Balogh , Jialin He , Robert A. Krueger , The Nguyen , Michael C. Wigal

Many real-world networks were found to be highly clustered, and contain a large amount of small cliques. We here investigate the number of cliques of any size k contained in a geometric inhomogeneous random graph: a scale-free network model…

Probability · Mathematics 2022-06-06 Riccardo Michielan , Clara Stegehuis

We study cliques in graphs arising from quadratic forms where the vertices are the elements of the module of the quadratic form and two vertices are adjacent if their difference represents some fixed scalar. We determine structural…

Number Theory · Mathematics 2023-06-13 Nico Lorenz , Marc Christian Zimmermann

Self-assembly of chiral particles with an L-shape is explored by Monte-Carlo computer simulations in two spatial dimensions. For sufficiently high packing densities in confinement, a carpet-like texture emerges due to the interlocking of…

Soft Condensed Matter · Physics 2023-05-10 Paul A. Monderkamp , Rika S. Windisch , René Wittmann , Hartmut Löwen

In this review we establish various connections between complex networks and symmetry. While special types of symmetries (e.g., automorphisms) are studied in detail within discrete mathematics for particular classes of deterministic graphs,…

General Finance · Quantitative Finance 2010-11-04 Diego Garlaschelli , Franco Ruzzenenti , Riccardo Basosi

We consider a set of cliques in any multipartite graph with two vertices in each part. Moreover, we construct a class of peculiar polytopes. Key words: multipartite graph, clique, polytope.

Combinatorics · Mathematics 2007-05-23 Julia V. Grishicheva , Alexander V. Seliverstov

In this paper we introduce and study the topology of clique complexes of multigraphs without loops. These clique complexes generalize tournaplexes, which were recently introduced by Govc, Levi, and Smith for the topological study of brain…

Algebraic Topology · Mathematics 2026-02-10 Anton Ayzenberg , Alexey Rukhovich

Let $\Gamma(n,k)$ be the set of $2$-connected $n$-vertex graphs containing an edge that is not on any cycle of length at least $k+1.$ Let $g_s(n,k)$ denote the maximum number of $s$-cliques in a graph in $\Gamma(n,k).$ Recently, Ji and Ye…

Combinatorics · Mathematics 2023-09-13 Leilei Zhang

We study some percolation problems on the complete graph over $\mathbf N$. In particular, we give sharp sufficient conditions for the existence of (finite or infinite) cliques and paths in a random subgraph. No specific assumption on the…

Probability · Mathematics 2011-03-29 A. Berarducci , P. Majer , M. Novaga

An edge clique cover of a graph is a set of cliques that covers all edges of the graph. We generalize this concept to "$K_t$ clique cover", i.e. a set of cliques that covers all complete subgraphs on $t$ vertices of the graph, for every $t…

Combinatorics · Mathematics 2019-10-17 Hoang Dau , Olgica Milenkovic , Gregory J. Puleo

In extremal graph theory, the problem of finding the elements of a given class of graphs which contain the most cliques traces its routes back to Tur\'an's famous theorem. We consider the implications of the connectivity property of…

Combinatorics · Mathematics 2018-10-11 Corbin Groothuis
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