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Gene Ontology (GO) is the most important resource for gene function annotation. It provides a way to unify biological knowledge across different species via a dynamic and controlled vocabulary. GO is now widely represented in the Semantic…

Genomics · Quantitative Biology 2019-09-26 Yanying Wu

Competency Questions (CQs) play a crucial role in validating ontology design. While manually crafting CQs can be highly time-consuming and costly for ontology engineers, recent studies have explored the use of large language models (LLMs)…

Artificial Intelligence · Computer Science 2025-11-19 Hyojun Choi , Seokju Hwang , Kyong-Ho Lee

In this paper, we introduce a novel interpreting framework that learns an interpretable model based on an ontology-based sampling technique to explain agnostic prediction models. Different from existing approaches, our algorithm considers…

Machine Learning · Computer Science 2020-04-02 Phung Lai , NhatHai Phan , Han Hu , Anuja Badeti , David Newman , Dejing Dou

In this paper we use results from Computable Set Theory as a means to represent and reason about description logics and rule languages for the semantic web. Specifically, we introduce the description logic $\mathcal{DL}\langle…

Logic in Computer Science · Computer Science 2015-05-11 Domenico Cantone , Cristiano Longo , Marianna Nicolosi-Asmundo , Daniele Francesco Santamaria

Inconsistency handling is an important issue in knowledge management. Especially in ontology engineering, logical inconsistencies may occur during ontology construction. A natural way to reason with an inconsistent ontology is to utilize…

Artificial Intelligence · Computer Science 2026-03-10 Keyu Wang , Site Li , Jiaye Li , Guilin Qi , Qiu Ji

Ontologies of research topics are crucial for structuring scientific knowledge, enabling scientists to navigate vast amounts of research, and forming the backbone of intelligent systems such as search engines and recommendation systems.…

Digital Libraries · Computer Science 2025-06-12 Tanay Aggarwal , Angelo Salatino , Francesco Osborne , Enrico Motta

Ontological queries are evaluated against a knowledge base consisting of an extensional database and an ontology (i.e., a set of logical assertions and constraints which derive new intensional knowledge from the extensional database),…

Databases · Computer Science 2014-05-13 Georg Gottlob , Giorgio Orsi , Andreas Pieris

This paper develops the idea of membership function assignment for OWL (Web Ontology Language) ontology elements in order to subsequently generate fuzzy rules from this ontology. The task of membership function assignment for OWL ontology…

Artificial Intelligence · Computer Science 2014-11-14 Olegs Verhodubs

This paper introduces an ontology-based approach within an adaptive learning support system for computer programming. This system (named ADVENTURE) is designed to deliver personalized programming exercises that are tailored to individual…

Programming Languages · Computer Science 2025-07-29 Lalita Na Nongkhai , Jingyun Wang , Takahiko Mendori

Agents, whether software or hardware, perceive their environment through sensors and act using actuators, often operating in dynamic, partially observable settings. They face challenges like incomplete and noisy data, unforeseen situations,…

Artificial Intelligence · Computer Science 2024-05-29 Saeedeh Ghanadbashi , Fatemeh Golpayegani

OWL (Web Ontology Language) ontologies which are able to formally represent complex knowledge and support semantic reasoning have been widely adopted across various domains such as healthcare and bioinformatics. Recently, ontology…

Artificial Intelligence · Computer Science 2025-07-22 Hui Yang , Jiaoyan Chen , Yuan He , Yongsheng Gao , Ian Horrocks

Ontology evaluation through functional requirements, such as testing via competency question (CQ) verification, is a well-established yet costly, labour-intensive, and error-prone endeavour, even for ontology engineering experts. In this…

Semantics based knowledge representations such as ontologies are found to be very useful in automatically generating meaningful factual questions. Determining the difficulty level of these system generated questions is helpful to…

Artificial Intelligence · Computer Science 2017-09-05 Vinu E. , P Sreenivasa Kumar

Capability ontologies are increasingly used to model functionalities of systems or machines. The creation of such ontological models with all properties and constraints of capabilities is very complex and can only be done by ontology…

Artificial Intelligence · Computer Science 2024-10-21 Luis Miguel Vieira da Silva , Aljosha Köcher , Felix Gehlhoff , Alexander Fay

Authoring of OWL-DL ontologies is intellectually challenging and to make this process simpler, many systems accept natural language text as input. A text-based ontology authoring approach can be successful only when it is combined with an…

Artificial Intelligence · Computer Science 2017-10-02 Kevin Alex Mathews , P Sreenivasa Kumar

Situation awareness is a crucial cognitive skill that enables individuals to perceive, comprehend, and project the current state of their environment accurately. It involves being conscious of relevant information, understanding its…

Information Retrieval · Computer Science 2023-07-26 Sumit Sharma , Sarika Jain

OWL ontologies are a quite popular way to describe structured knowledge in terms of classes, relations among classes and class instances. In this paper, given a target class T of an OWL ontology, with a focus on ontologies with real- and…

Artificial Intelligence · Computer Science 2024-06-17 Franco Alberto Cardillo , Franca Debole , Umberto Straccia

Retrieve information resources made by the machine processing may refer to multiple sources. A personal web as part of information resources in the Internet requires a feature that can be understood by computer machines. Therefore, in this…

Digital Libraries · Computer Science 2013-12-23 Istiadi , Azhari

Despite rapid progress, most of the educational technologies today lack a strong instructional design knowledge basis leading to questionable quality of instruction. In addition, a major challenge is to customize these educational…

Computers and Society · Computer Science 2018-02-14 Sridhar Chimalakonda , Kesav V. Nori

The mainstream approach to the development of ontologies is merging ontologies encoding different information, where one of the major difficulties is that the heterogeneity motivates the ontology merging but also limits high-quality merging…

Artificial Intelligence · Computer Science 2023-04-26 Daqian Shi , Fausto Giunchiglia
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