Related papers: Computing Real Numbers using DNA Self-Assembly
In this paper, we introduce the following problem in the theory of algorithmic self-assembly: given an input shape as the seed of a tile-based self-assembly system, design a finite tile set that can, in some sense, uniquely identify whether…
Ordered nanoarrays, i.e. regular patterns of quantum structures at the nanometre scale, have recently been synthesized in a wide range of systems. Here I explore a possible route to technological exploitation: assuming a simple form of…
Self-assembly is one of the most promising strategies for making functional materials at the nanoscale, yet new design principles for making self-limiting architectures, rather than spatially unlimited periodic lattice structures, are…
DNA data storage offers a high-density, long-term alternative to traditional storage systems, addressing the exponential growth of digital data. Composite DNA extends this paradigm by leveraging mixtures of nucleotides to increase storage…
Biological materials are self-assembled with near-atomic precision in living cells, whereas synthetic 3D structures generally lack such precision and controllability. Recently, DNA nanotechnology, especially DNA origami technology, has been…
We consider the following "partition and sum" operation on a natural number: Treating the number as a long string of digits insert several plus signs in between some of the digits and carry out the indicated sum. This results in a smaller…
At the cutting edge of materials science, matter is designed to self-organize into structures that perform a wide range of functions. The past two decades have witnessed major innovations in the versatility of building blocks, ranging from…
We use the method of tiling to give elementary combinatorial proofs of some celebrated $q$-series identities, such as Jacobi triple product identity, Rogers-Ramanujan identities, and some identities of Rogers. We give a tiling proof of the…
We consider the tiling of an $n$-board (a $1\times n$ array of square cells of unit width) with half-squares ($\frac12\times1$ tiles) and $(\frac12,\frac12)$-fence tiles. A $(\frac12,\frac12)$-fence tile is composed of two half-squares…
The operation of binary intermolecular recombination, originating in the theory of DNA computing, permits a natural generalization to n-ary operations which perform simultaneous recombination of n molecules. In the case n = 3, we use…
We study a bijective map from integer partitions to the prime factorizations of integers that we call the "supernorm" of a partition, in which the multiplicities of the parts of partitions are mapped to the multiplicities of prime factors…
In this thesis we will present and discuss various results pertaining to tiling problems and mathematical logic, specifically computability theory. We focus on Wang prototiles, as defined in [32]. We begin by studying Domino Problems, and…
Working in a three-dimensional variant of Winfree's abstract Tile Assembly Model, we show that, for all $N \in \mathbb{N}$, there is a tile set that uniquely self-assembles into an $N \times N$ square shape at temperature 1 with optimal…
There are numerous ways to represent real numbers. We may use, e.g., Cauchy sequences, Dedekind cuts, numerical base-10 expansions, numerical base-2 expansions and continued fractions. If we work with full Turing computability, all these…
Univariate polynomial root-finding is both classical and important for modern computing. Frequently one seeks just the real roots of a polynomial with real coefficients. They can be approximated at a low computational cost if the polynomial…
Experiments have reached a monumental capacity for designing and synthesizing microscopic particles for self-assembly, making it possible to precisely control particle concentrations, shapes, and interactions. However, more physical insight…
In this paper we define the Dupled abstract Tile Assembly Model (DaTAM), which is a slight extension to the abstract Tile Assembly Model (aTAM) that allows for not only the standard square tiles, but also "duple" tiles which are rectangles…
In this paper we introduce the \emph{robust random number generation} problem where the goal is to design an abstract tile assembly system (aTAM system) whose terminal assemblies can be split into $n$ partitions such that a resulting…
DNA strings and their properties are widely studied since last 20 years due to its applications in DNA computing. In this area, one designs a set of DNA strings (called DNA code) which satisfies certain thermodynamic and combinatorial…
We study the problem of the self-assembly of nanoparticles (NPs) into finite mesoscopic structures with a programmed local morphology and complex overall shape. Our proposed building blocks are NPs directionally-functionalized with DNA. The…