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The relationship between the design and functionality of molecular networks is now a key issue in biology. Comparison of regulatory networks performing similar tasks can give insights into how network architecture is constrained by the…

Molecular Networks · Quantitative Biology 2015-06-26 Ala Trusina , Kim Sneppen , Ian B. Dodd , Keith E. Shearwin , J. Barry Egan

This paper studies binary classification problem associated with a family of loss functions called large-margin unified machines (LUM), which offers a natural bridge between distribution-based likelihood approaches and margin-based…

Machine Learning · Statistics 2019-08-14 Jun Fan , Dao-Hong Xiang

Generalized linear models (GLMs) are popular for data-analysis in almost all quantitative sciences, but the choice of likelihood family and link function is often difficult. This motivates the search for likelihoods and links that minimize…

Methodology · Statistics 2024-03-19 Maximilian Scholz , Paul-Christian Bürkner

Substructural logics naturally support a quantitative interpretation of formulas, as they are seen as consumable resources. Distances are the quantitative counterpart of equivalence relations: they measure how much two objects are similar,…

Logic in Computer Science · Computer Science 2025-02-05 Francesco Dagnino , Fabio Pasquali

The logistic and probit link functions are the most common choices for regression models with a binary response. However, these choices are not robust to the presence of outliers/unexpected observations. The robit link function, which is…

Statistics Theory · Mathematics 2021-12-21 Sourav Mukherjee , Kshitij Khare , Saptarshi Chakraborty

This article proposes a family of link functions for the multinomial response model. The link family includes the multicategorical logistic link as one of its members. Conditions for the local orthogonality of the link and the regression…

Statistics Theory · Mathematics 2012-11-30 I. Das , S. Mukhopadhyay

The choice of activation functions and their motivation is a long-standing issue within the neural network community. Neuronal representations within artificial neural networks are commonly understood as logits, representing the log-odds…

Machine Learning · Computer Science 2022-11-30 Scott C. Lowe , Robert Earle , Jason d'Eon , Thomas Trappenberg , Sageev Oore

In principle, the rules of links formation of a network model can be considered as a kind of link prediction algorithm. By revisiting the preferential attachment mechanism for generating a scale-free network, here we propose a class of…

Physics and Society · Physics 2012-11-09 Ke Hu , Ju Xiang , Wanchun Yang , Xiaoke Xu , Yi Tang

Link prediction plays an important role in network analysis and applications. Recently, approaches for link prediction have evolved from traditional similarity-based algorithms into embedding-based algorithms. However, most existing…

Social and Information Networks · Computer Science 2020-08-11 Lei Wang , Jing Ren , Bo Xu , Jianxin Li , Wei Luo , Feng Xia

The past few years have seen a surge of interest in the field of probabilistic logic learning and statistical relational learning. In this endeavor, many probabilistic logics have been developed. ProbLog is a recent probabilistic extension…

Programming Languages · Computer Science 2011-03-04 Angelika Kimmig , Bart Demoen , Luc De Raedt , Vítor Santos Costa , Ricardo Rocha

This study proposes a novel method for estimation and hypothesis testing in high-dimensional single-index models. We address a common scenario where the sample size and the dimension of regression coefficients are large and comparable.…

Statistics Theory · Mathematics 2024-04-30 Kazuma Sawaya , Yoshimasa Uematsu , Masaaki Imaizumi

In this work, we take a closer look at the evaluation of two families of methods for enriching information from knowledge graphs: Link Prediction and Entity Alignment. In the current experimental setting, multiple different scores are…

Machine Learning · Computer Science 2023-09-21 Max Berrendorf , Evgeniy Faerman , Laurent Vermue , Volker Tresp

Explaining the predictions made by complex machine learning models helps users to understand and accept the predicted outputs with confidence. One promising way is to use similarity-based explanation that provides similar instances as…

Machine Learning · Computer Science 2021-03-24 Kazuaki Hanawa , Sho Yokoi , Satoshi Hara , Kentaro Inui

Binary relations are an important abstraction arising in many data representation problems. The data structures proposed so far to represent them support just a few basic operations required to fit one particular application. We identify…

Data Structures and Algorithms · Computer Science 2012-01-18 Jérémy Barbay , Francisco Claude , Gonzalo Navarro

The task of fully inductive link prediction in knowledge graphs has gained significant attention, with various graph neural networks being proposed to address it. This task presents greater challenges than traditional inductive link…

Machine Learning · Computer Science 2025-01-15 Jincheng Zhou , Yucheng Zhang , Jianfei Gao , Yangze Zhou , Bruno Ribeiro

Two indicators are classically used to evaluate the quality of rule-based classification systems: predictive accuracy, i.e. the system's ability to successfully reproduce learning data and coverage, i.e. the proportion of possible cases for…

Artificial Intelligence · Computer Science 2020-04-07 Nassim Dehouche

Challenging research in various fields has driven a wide range of methodological advances in variable selection for regression models with high-dimensional predictors. In comparison, selection of nonlinear functions in models with additive…

Methodology · Statistics 2013-03-05 Fabian Scheipl , Thomas Kneib , Ludwig Fahrmeir

Link prediction, the problem of identifying missing links among a set of inter-related data entities, is a popular field of research due to its application to graph-like domains. Producing consistent evaluations of the performance of the…

Social and Information Networks · Computer Science 2016-11-28 Dario Garcia-Gasulla , Eduard Ayguadé , Jesús Labarta , Ulises Cortés

As a fundamental challenge in vast disciplines, link prediction aims to identify potential links in a network based on the incomplete observed information, which has broad applications ranging from uncovering missing protein-protein…

Social and Information Networks · Computer Science 2017-05-08 Hao Liao , Mingyang Zhou , Zong-Wen Wei , Rui Mao , Alexandre Vidmer , Yi-Cheng Zhang

The past few years has witnessed the great success of recommender systems, which can significantly help users find relevant and interesting items for them in the information era. However, a vast class of researches in this area mainly focus…

Information Retrieval · Computer Science 2012-04-10 Xiao Hu , Chuibo Chen , Xiaolong Chen , Zi-Ke Zhang
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