English
Related papers

Related papers: Correcting Illumina sequencing errors for human da…

200 papers

Nanopore sequencing technology has the potential to render other sequencing technologies obsolete with its ability to generate long reads and provide portability. However, high error rates of the technology pose a challenge while generating…

Genomics · Quantitative Biology 2019-12-20 Damla Senol Cali , Jeremie S. Kim , Saugata Ghose , Can Alkan , Onur Mutlu

In this work, we present a novel module to perform fusion of heterogeneous data using fully convolutional networks for semantic labeling. We introduce residual correction as a way to learn how to fuse predictions coming out of a dual stream…

Neural and Evolutionary Computing · Computer Science 2017-01-23 Nicolas Audebert , Bertrand Le Saux , Sébastien Lefèvre

Intercellular heterogeneity serves as both a confounding factor in studying individual clones and an information source in characterizing any heterogeneous tissues, such as blood, tumor systems. Due to inevitable sequencing errors and other…

Genomics · Quantitative Biology 2014-09-30 Guoqiang Yu , Roger R. Wang , Sean S. Wang , Niya Wang , Yue Wang

The detection of local genomic signals using high-throughput DNA sequencing data can be cast as a problem of scanning a Poisson random field for local changes in the rate of the process. We propose a likelihood-based framework for for such…

Applications · Statistics 2014-06-13 Nancy R. Zhang , Benjamin Yakir , Charlie L. Xia , David Siegmund

Internet of Things (IoT) systems are vulnerable to data collection errors and these errors can significantly degrade the quality of collected data, impact data analysis and lead to inaccurate or distorted results. This article emphasizes…

Doing quantitative computed tomography (CT) using Bremsstrahlung sources requires an estimate of the spectrum emitted by the X-ray source. One method of beam hardening correction (BHC), as described by Lifton[1], first uses transmission…

Medical Physics · Physics 2025-08-13 Nikhil Deshmukh

The stellar population synthesis in unresolved composite objects is a very tricky problem. Indeed, it is a degenerate problem since many parameters affect the observables. The stellar population synthesis issue thus deserves a deep and…

Astrophysics · Physics 2009-11-10 J. Moultaka

We have devised a simple numerical technique to treat rugged data points that arise due to the insufficient gain setting error (or quantization error) of a digital instrument. This is a very wide spread problem that all experimentalists…

Data Analysis, Statistics and Probability · Physics 2010-12-30 Ayan Paul , P. K. Mukhopadhyay

The widespread adoption of machine learning in critical applications demands techniques to mitigate high-consequence errors. Our method utilizes a dual-classifier GBDT pipeline to distinguish routine human-like errors from high-risk…

Artificial Intelligence · Computer Science 2026-05-05 Abolfazl Mohammadi-Seif , Ricardo Baeza-Yates

Despite powering sensitive systems like autonomous vehicles, object detection remains fairly brittle in part due to annotation errors that plague most real-world training datasets. We propose ObjectLab, a straightforward algorithm to detect…

Computer Vision and Pattern Recognition · Computer Science 2023-09-06 Ulyana Tkachenko , Aditya Thyagarajan , Jonas Mueller

The most realistic information about the transparent sample such as a live cell can be obtained only using bright-field light microscopy. At high-intensity pulsing LED illumination, we captured a primary 12-bit-per-channel (bpc) response…

Image and Video Processing · Electrical Eng. & Systems 2021-08-18 Ganna Platonova , Dalibor Stys , Pavel Soucek , Kirill Lonhus , Jan Valenta , Renata Rychtarikova

Most existing super-resolution methods do not perform well in real scenarios due to lack of realistic training data and information loss of the model input. To solve the first problem, we propose a new pipeline to generate realistic…

Image and Video Processing · Electrical Eng. & Systems 2019-05-30 Xiangyu Xu , Yongrui Ma , Wenxiu Sun

This study introduces a laboratory experiment designed to assess the influence of annotation strategies, levels of imbalanced data, and prior experience, on the performance of human annotators. The experiment focuses on labeling aerial…

Computer Vision and Pattern Recognition · Computer Science 2024-09-24 Roni Blushtein-Livnon , Tal Svoray , Michael Dorman

Grammatical error correction, like other machine learning tasks, greatly benefits from large quantities of high quality training data, which is typically expensive to produce. While writing a program to automatically generate realistic…

Computation and Language · Computer Science 2018-10-02 Sudhanshu Kasewa , Pontus Stenetorp , Sebastian Riedel

Despite the great advance of Multimodal Large Language Models (MLLMs) in both instruction dataset building and benchmarking, the independence of training and evaluation makes current MLLMs hard to further improve their capability under the…

Machine Learning · Computer Science 2023-09-12 Zhiyuan Zhao , Linke Ouyang , Bin Wang , Siyuan Huang , Pan Zhang , Xiaoyi Dong , Jiaqi Wang , Conghui He

A new method to identify all sufficiently long repeating substrings in one or several symbol sequences is proposed. The method is based on a specific gauge applied to symbol sequences that guarantees identification of the repeating…

Genomics · Quantitative Biology 2016-04-07 Sergey Tsarev , Michael Sadovsky

Machine Learning (ML) and its applications have been transforming our lives but it is also creating issues related to the development of fair, accountable, transparent, and ethical Artificial Intelligence. As the ML models are not fully…

Applications · Statistics 2021-06-30 Yihuang Kang , Yi-Wen Chiu , Ming-Yen Lin , Fang-yi Su , Sheng-Tai Huang

The estimation of phase errors from digital-holography data is critical for applications such as imaging or wave-front sensing. Conventional techniques require multiple i.i.d. data and perform poorly in the presence of high noise or large…

Data Analysis, Statistics and Probability · Physics 2017-10-11 Casey J. Pellizzari , Mark F. Spencer , Charles A. Bouman

The shotgun sequencing process involves fragmenting a long DNA sequence (input string) into numerous shorter, unordered, and overlapping segments (referred to as \emph{reads}). The reads are sequenced, and later aligned to reconstruct the…

Information Theory · Computer Science 2025-09-26 Mohammed Ihsan Ali , Hrishi Narayanan , Prasad Krishnan

The ability of a classifier to take on new information and classes by evolving the classifier without it having to be fully retrained is known as incremental learning. Incremental learning has been successfully applied to many…

Machine Learning · Computer Science 2007-09-26 Greg Hulley , Tshilidzi Marwala