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We describe a numerical technique and accompanying open-source Python software package called RydIQule. RydIQule uses a directional graph, relying on adjacency matrices and path-finding to generate a Hamiltonian for multi-level atomic…
A formal derivation is presented of the energy transfer rate between radiation and matter due to the scattering of an isotropic distribution of resonant photons. The derivation is developed in the context of the two-level atom in the…
I present CMBAnalysis, a state-of-the-art Python framework designed for high-precision analysis of Cosmic Microwave Background (CMB) radiation data. This comprehensive package implements parallel Markov Chain Monte Carlo (MCMC) techniques…
Gammapy is a Python package for high-level gamma-ray data analysis built on Numpy, Scipy and Astropy. It enables us to analyze gamma-ray data and to create sky images, spectra and lightcurves, from event lists and instrument response…
This paper introduces students and instructors to the use of Scilab for calculating phase shifts from phenomenological potentials in nuclear, atomic, and molecular scattering, beginning with a Riccati-type nonlinear differential equation…
We present the python package DiPolMol-Py, which can be used to calculate the rotational and hyperfine structure of $^2\Sigma$ molecules. The calculations can be performed in the presence of dc magnetic fields, dc electric fields and far…
We introduce hankl, a lightweight Python implementation of the FFTLog algorithm for Cosmology. The FFTLog algorithm is an extension of the Fast Fourier Transform (FFT) for logarithmically spaced periodic sequences. It can be used to…
The increasing availability of high-quality optical and near-infrared spectroscopic data, as well as advances in modelling techniques, have greatly expanded the scientific potential of spectroscopic studies. However, the software tools…
Libpsht (or "library for Performant Spherical Harmonic Transforms") is a collection of algorithms for efficient conversion between spatial-domain and spectral-domain representations of data defined on the sphere. The package supports…
The aghq package for implementing approximate Bayesian inference using adaptive quadrature is introduced. The method and software are described, and use of the package in making approximate Bayesian inferences in several challenging low-…
We present the open-source pyratbay framework for exoplanet atmospheric modeling, spectral synthesis, and Bayesian retrieval. The modular design of the code allows the users to generate atmospheric 1D parametric models of the temperature,…
A simple and general implementation of Hamiltonian replica exchange for the popular molecular-dynamics software GROMACS is presented. In this implementation, arbitrarily different Hamiltonians can be used for the different replicas without…
Non-LTE radiative transfer is a key tool for modern astrophysics: it is the means by which many key synthetic observables are produced, thus connecting simulations and observations. Radiative transfer models also inform our understanding of…
TBPLaS is an open-source software package for the accurate simulation of physical systems with arbitrary geometry and dimensionality utilizing the tight-binding (TB) theory. It has an intuitive object-oriented Python application interface…
To study the temperature in a gas subjected to electromagnetic radiations, one may use the Radiative Transfer equations coupled with the Navier-Stokes equations. The problem has 7 dimensions; however with minimal simplifications it is…
We present some analytical solutions to the Einstein equations, describing radiating collapsing spheres in the diffusion approximation. Solutions allow for modeling physical reasonable situations. The temperature is calculated for each…
We present the first fast and detailed computation of the cosmological recombination radiation released during the hydrogen (redshift z ~ 1300) and helium (z ~ 2500 and z ~ 6000) recombination epochs, introducing the code CosmoSpec. Our…
We present a new formal solution of the Lagrangian equation of radiative transfer that is useful in solving the equation of radiative transfer in the presence of arbitrary velocity fields. Normally a term due to the inclusion of the…
Motivated by observational and theoretical work which both suggest very small scale ($\lesssim 1\,$pc) structure in the circum-galactic medium of galaxies and in other environments, we study Lyman-$\alpha$ (Ly$\alpha$) radiative transfer in…
Accreting supermassive black holes are sources of polarized radiation that propagates through highly curved spacetime before reaching the observer. In order to help interpret observations of such polarized emission, accurate and efficient…