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A central idea in understanding brains and building artificial intelligence is that structure determines function. Yet, how the brain's complex structure arises from a limited set of genetic instructions remains a key question. The ultra…

Neurons and Cognition · Quantitative Biology 2026-01-28 Xingyu Liu , Yubin Li , Guozhang Chen

Consider a stationary Poisson process $\eta$ in a $d$-dimensional hyperbolic space of constant curvature $-\varkappa$ and let the points of $\eta$ together with a fixed origin $o$ be the vertices of a graph. Connect each point $x\in\eta$…

Probability · Mathematics 2024-08-28 Daniel Rosen , Matthias Schulte , Christoph Thäle , Vanessa Trapp

The discovery of place cells and other spatially modulated neurons in the hippocampal complex of rodents has been crucial to elucidating the neural basis of spatial cognition. More recently, the replay of neural sequences encoding…

Neurons and Cognition · Quantitative Biology 2023-01-18 Adedapo Alabi , Dieter Vanderelst , Ali Minai

Lattices abound in nature - from the crystal structure of minerals to the honey-comb organization of ommatidia in the compound eye of insects. Such regular arrangements provide solutions for optimally dense packings, efficient resource…

Neurons and Cognition · Quantitative Biology 2015-05-12 Alexander Mathis , Martin B. Stemmler , Andreas V. M. Herz

The recent reconstruction of the Drosophila brain provides a neural network of unprecedented size and level of details. In this work, we study the geometrical properties of this system by applying network embedding techniques to the graph…

Physics and Society · Physics 2026-02-19 Bendegúz Sulyok , Sámuel G. Balogh , Gergely Palla

Learning representations according to the underlying geometry is of vital importance for non-Euclidean data. Studies have revealed that the hyperbolic space can effectively embed hierarchical or tree-like data. In particular, the few past…

Machine Learning · Computer Science 2023-06-16 Eric Qu , Dongmian Zou

Consider a stationary Poisson process $\eta$ in the $d$-dimensional Euclidean or hyperbolic space and construct a random graph with vertex set $\eta$ as follows. First, each point $x\in\eta$ is connected by an edge to its nearest neighbour,…

Probability · Mathematics 2024-11-04 Holger Sambale , Christoph Thäle , Tara Trauthwein

If robots are to become ubiquitous, they will need to be able to adapt to complex and dynamic environments. Robots that can adapt their bodies while deployed might be flexible and robust enough to meet this challenge. Previous work on…

Robotics · Computer Science 2019-07-24 Tønnes F. Nygaard , Charles P. Martin , Jim Torresen , Kyrre Glette

Non-Euclidean geometry, discovered by negating Euclid's parallel postulate, has been of considerable interest in mathematics and related fields for the description of geographical coordinates, Internet infrastructures, and the general…

Optics · Physics 2020-08-05 Sunkyu Yu , Xianji Piao , Namkyoo Park

The hippocampal-entorhinal complex plays a major role in the organization of memory and thought. The formation of and navigation in cognitive maps of arbitrary mental spaces via place and grid cells can serve as a representation of memories…

Neurons and Cognition · Quantitative Biology 2022-10-31 Paul Stoewer , Achim Schilling , Andreas Maier , Patrick Krauss

Generative network models play an important role in algorithm development, scaling studies, network analysis, and realistic system benchmarks for graph data sets. The commonly used graph-based benchmark model R-MAT has some drawbacks…

Data Structures and Algorithms · Computer Science 2016-07-01 Moritz von Looz , Mustafa Özdayi , Sören Laue , Henning Meyerhenke

We introduce a formalism for the geometry of eukaryotic cells and organisms.Cells are taken to be star-convex with good biological reason. This allows for a convenient description of their extent in space as well as all manner of cell…

Other Quantitative Biology · Quantitative Biology 2014-10-03 Nadya Morozova , Robert Penner

Space is represented in the mammalian brain by the activity of hippocampal place cells as well as in their spike-timing correlations. Here we propose a theory how this temporal code is transformed to spatial firing rate patterns via…

Neurons and Cognition · Quantitative Biology 2017-08-02 Mauro M. Monsalve-Mercado , Christian Leibold

The study of (minimally) rigid graphs is motivated by numerous applications, mostly in robotics and bioinformatics. A major open problem concerns the number of embeddings of such graphs, up to rigid motions, in Euclidean space. We capture…

Computational Geometry · Computer Science 2009-08-27 Ioannis Z. Emiris , Elias P. Tsigaridas , Antonios Varvitsiotis

Higher-dimensional spaces are ubiquitous in applications of mathematics. Yet, as we live in a three-dimensional space, visualizing, say, a four-dimensional space is challenging. We introduce a novel method of interactive visualization of…

Graphics · Computer Science 2021-10-04 Eryk Kopczyński , Dorota Celińska-Kopczyńska

We propose methods towards a systematic determination of d dimensional curved spaces where Euclidean field theories with rigid supersymmetry can be defined. The analysis is carried out from a group theory as well as from a supergravity…

High Energy Physics - Theory · Physics 2015-06-12 A. Kehagias , J. G. Russo

The development of data-dependent heuristics and representations for biological sequences that reflect their evolutionary distance is critical for large-scale biological research. However, popular machine learning approaches, based on…

Quantitative Methods · Quantitative Biology 2021-10-13 Gabriele Corso , Rex Ying , Michal Pándy , Petar Veličković , Jure Leskovec , Pietro Liò

Neural network representations are often analyzed as vectors in a fixed Euclidean space. However, their coordinates are not uniquely defined. If a hidden representation is transformed by an invertible linear map, the network function can be…

Machine Learning · Computer Science 2026-03-10 Jericho Cain

Embedding geometry plays a fundamental role in retrieval quality, yet dense retrievers for retrieval-augmented generation (RAG) remain largely confined to Euclidean space. However, natural language exhibits hierarchical structure from broad…

Information Retrieval · Computer Science 2026-02-10 Hiren Madhu , Ngoc Bui , Ali Maatouk , Leandros Tassiulas , Smita Krishnaswamy , Menglin Yang , Sukanta Ganguly , Kiran Srinivasan , Rex Ying

We study the neural field equations introduced by Chossat and Faugeras in their article to model the representation and the processing of image edges and textures in the hypercolumns of the cortical area V1. The key entity, the structure…

Dynamical Systems · Mathematics 2010-05-05 Grégory Faye , Pascal Chossat , Olivier Faugeras
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