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Advances in neuroscience have enabled researchers to measure the activities of large numbers of neurons simultaneously in behaving animals. We have access to the fluorescence of each of the neurons which provides a first-order approximation…

Neurons and Cognition · Quantitative Biology 2023-07-21 Abhisek Chakraborty

Background: In neurophysiological data, latency refers to a global shift of spikes from one spike train to the next, either caused by response onset fluctuations or by finite propagation speed. Such systematic shifts in spike timing lead to…

Sensory stimuli in animals are encoded into spike trains by neurons, offering advantages such as sparsity, energy efficiency, and high temporal resolution. This paper presents a signal processing framework that deterministically encodes…

Neural and Evolutionary Computing · Computer Science 2024-08-15 Anik Chattopadhyay , Arunava Banerjee

Sampling considerations limit the experimental conditions under which information theoretic analyses of neurophysiological data yield reliable results. We develop a procedure for computing the full temporal entropy and information of…

Biological Physics · Physics 2009-11-06 Simon R. Schultz , Stefano Panzeri

Spatio-temporal trajectory analytics is at the core of smart mobility solutions, which offers unprecedented information for diversified applications such as urban planning, infrastructure development, and vehicular networks. Trajectory…

Data Structures and Algorithms · Computer Science 2023-03-20 Danlei Hu , Lu Chen , Hanxi Fang , Ziquan Fang , Tianyi Li , Yunjun Gao

We present a methodology to characterize synchronization in time series based on symbolic representations. A symbol is linked to a sequence of numbers through the rank-order of its values. A representation of a time series results after…

Data Analysis, Statistics and Probability · Physics 2009-11-13 Roberto Monetti , Wolfram Bunk , Ferdinand Jamitzky

Distance measures have been recognized as one of the fundamental building blocks in time-series analysis tasks, e.g., querying, indexing, classification, clustering, anomaly detection, and similarity search. The vast proliferation of…

Databases · Computer Science 2024-12-31 John Paparrizos , Haojun Li , Fan Yang , Kaize Wu , Jens E. d'Hondt , Odysseas Papapetrou

Numerical investigations have been made of responses of a Hodgkin-Huxley (HH) neuron to spike-train inputs whose interspike interval (ISI) is modulated by deterministic, semi-deterministic (chaotic) and stochastic signals. As deterministic…

Disordered Systems and Neural Networks · Physics 2009-10-31 Hideo Hasegawa

Background: Spike trains of multiple neurons can be analyzed following the summed population (SP) or the labeled line (LL) hypothesis. Responses to external stimuli are generated by a neuronal population as a whole or the individual neurons…

Neurons and Cognition · Quantitative Biology 2018-09-17 Eero Satuvuori , Mario Mulansky , Andreas Daffertshofer , Thomas Kreuz

Accurate statistical models of neural spike responses can characterize the information carried by neural populations. But the limited samples of spike counts during recording usually result in model overfitting. Besides, current models…

Quantitative Methods · Quantitative Biology 2021-06-17 Qi She , Xiaoli Wu , Beth Jelfs , Adam S. Charles , Rosa H. M. Chan

Neural noise sets a limit to information transmission in sensory systems. In several areas, the spiking response (to a repeated stimulus) has shown a higher degree of regularity than predicted by a Poisson process. However, a simple model…

Neurons and Cognition · Quantitative Biology 2018-01-08 Ulisse Ferrari , Stephane Deny , Olivier Marre , Thierry Mora

Defining and measuring phase synchronization in a pair of nonlinear time series are highly nontrivial. This can be done with the help of Fourier transform, when it exists, for a pair of stored (hence stationary) signals. In a time series…

Chaotic Dynamics · Physics 2007-05-23 Kaushik Majumdar

We introduce Ordinal Synchronization ($OS$) as a new measure to quantify synchronization between dynamical systems. $OS$ is calculated from the extraction of the ordinal patterns related to two time series, their transformation into…

Quantitative Methods · Quantitative Biology 2019-01-30 Ignacio Echegoyen , Victor Vera-Ávila , Ricardo Sevilla-Escoboza , Johann H. Martínez , Javier M. Buldú

We propose an approach to assess the synchronization of rigidly mounted sensors based on their rotational motion. Using function similarity measures combined with a sliding window approach, our approach is capable of estimating time-varying…

Robotics · Computer Science 2024-10-01 Thomas Wodtko , Alexander Scheible , Michael Buchholz

Motivated by studies of indirect measurements in quantum mechanics, we investigate stochastic differential equations with a fixed point subject to an additional infinitesimal repulsive perturbation. We conjecture, and prove for an important…

Mathematical Physics · Physics 2018-07-18 Michel Bauer , Denis Bernard

A time series is a sequence of data items; typical examples are videos, stock ticker data, or streams of temperature measurements. Quite some research has been devoted to comparing and indexing simple time series, i.e., time series where…

Computational Complexity · Computer Science 2018-06-04 Jörg P. Bachmann , Johann-Christoph Freytag , Benjamin Hauskeller , Nicole Schweikardt

Modeling spike firing assumes that spiking statistics are Poisson, but real data violates this assumption. To capture non-Poissonian features, in order to fix the inevitable inherent irregularity, researchers rescale the time axis with…

Neural and Evolutionary Computing · Computer Science 2013-03-06 M. A. El-Dosuky , M. Z. Rashad , T. T. Hamza , A. H. EL-Bassiouny

Over the brief time intervals available for processing retinal output, roughly 50 to 300 msec, the number of extra spikes generated by individual ganglion cells can be quite variable. Here, computer-generated spike trains were used to…

Neurons and Cognition · Quantitative Biology 2007-09-14 Garrett T. Kenyon

Now that spike trains from many neurons can be recorded simultaneously, there is a need for methods to decode these data to learn about the networks that these neurons are part of. One approach to this problem is to adjust the parameters of…

Quantitative Methods · Quantitative Biology 2011-06-10 John Hertz , Yasser Roudi , Joanna Tyrcha

Paced finger tapping is one of the simplest tasks to study sensorimotor synchronization. The subject is instructed to tap in synchrony with a periodic sequence of brief tones, and the time difference (called asynchrony) between each…

Neurons and Cognition · Quantitative Biology 2019-12-25 Claudia R. González , M. Luz Bavassi , Rodrigo Laje