Related papers: Parameterized Complexity of Superstring Problems

In the problem of $\texttt{Generalised Pattern Matching}\ (\texttt{GPM})$ [STOC'94, Muthukrishnan and Palem], we are given a text $T$ of length $n$ over an alphabet $\Sigma_T$, a pattern $P$ of length $m$ over an alphabet $\Sigma_P$, and a…

We study the fundamental problem of finding the best string to represent a given set, in the form of the Closest String problem: Given a set $X \subseteq \Sigma^d$ of $n$ strings, find the string $x^*$ minimizing the radius of the smallest…

For a given graph $G=(V,\, E)$ with a terminal set $S$ and a selected root $r\in S$, a positive integer cost and a delay on every edge and a delay constraint $D\in Z^{+}$, the shallow-light Steiner tree (\emph{SLST}) problem is to compute a…

It is impossible to effectively modify a string in order to increase its Kolmogorov complexity. But is it possible to construct a few strings, not longer than the input string, so that most of them have larger complexity? We show that the…

Suppose an oracle knows a string $S$ that is unknown to us and that we want to determine. The oracle can answer queries of the form "Is $s$ a substring of $S$?". In 1995, Skiena and Sundaram showed that, in the worst case, any algorithm…

A graph $H$ is {\em $p$-edge colorable} if there is a coloring $\psi: E(H) \rightarrow \{1,2,\dots,p\}$, such that for distinct $uv, vw \in E(H)$, we have $\psi(uv) \neq \psi(vw)$. The {\sc Maximum Edge-Colorable Subgraph} problem takes as…

We consider the problem of encoding a string of length $n$ from an integer alphabet of size $\sigma$ so that access and substring equality queries (that is, determining the equality of any two substrings) can be answered efficiently. Any…

In this paper we define a new problem, motivated by computational biology, $LCSk$ aiming at finding the maximal number of $k$ length $substrings$, matching in both input strings while preserving their order of appearance. The traditional…

Shannon's entropy is a definitive lower bound for statistical compression. Unfortunately, no such clear measure exists for the compressibility of repetitive strings. Thus, ad hoc measures are employed to estimate the repetitiveness of…

Let $n$ be the size of a parameterized problem and $k$ the parameter. We present kernels for Feedback Vertex Set, Path Contraction and Cluster Editing/Deletion whose sizes are all polynomial in $k$ and that are computable in polynomial time…

We study the parameterized complexity of the $s$-Club Cluster Edge Deletion problem: Given a graph $G$ and two integers $s \ge 2$ and $k \ge 1$, is it possible to remove at most $k$ edges from $G$ such that each connected component of the…

In the Shortest-Superstring problem, we are given a set of strings S and want to find a string that contains all strings in S as substrings and has minimum length. This is a classical problem in approximation and the best known…

We present several sparsification lower and upper bounds for classic problems in graph theory and logic. For the problems 4-Coloring, (Directed) Hamiltonian Cycle, and (Connected) Dominating Set, we prove that there is no polynomial-time…

We re-visit the complexity of kernelization for the $d$-Hitting Set problem. This is a classic problem in Parameterized Complexity, which encompasses several other of the most well-studied problems in this field, such as Vertex Cover,…

We examine the open problem of finding the shortest string that contains each of the n! permutations of n symbols as contiguous substrings (i.e., the shortest superpermutation on n symbols). It has been conjectured that the shortest…

We show that any submodular minimization (SM) problem defined on a linear constraint set with constraints having up to two variables per inequality, are 2-approximable in polynomial time. If the constraints are monotone (the two variables…

The classic exact pattern matching problem, given two strings -- a pattern $P$ of length $m$ and a text $T$ of length $n$ -- asks whether $P$ occurs as a substring of $T$. A property tester for the problem needs to distinguish (with high…

We present the first results on the parameterized complexity of reconfiguration problems, where a reconfiguration version of an optimization problem $Q$ takes as input two feasible solutions $S$ and $T$ and determines if there is a sequence…

We show that for a number of parameterized problems for which only $2^{O(k)} n^{O(1)}$ time algorithms are known on general graphs, subexponential parameterized algorithms with running time $2^{O(k^{1-\frac{1}{1+\delta}} \log^2 k)}…

The cyclability of a graph is the maximum integer $k$ for which every $k$ vertices lie on a cycle. The algorithmic version of the problem, given a graph $G$ and a non-negative integer $k,$ decide whether the cyclability of $G$ is at least…