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Pairwise ordered tree alignment are combinatorial objects that appear in RNA secondary structure comparison. However, the usual representation of tree alignments as supertrees is ambiguous, i.e. two distinct supertrees may induce identical…

Quantitative Methods · Quantitative Biology 2016-03-08 Cedric Chauve , Julien Courtiel , Yann Ponty

We study set partitions with $r$ distinguished elements and block sizes found in an arbitrary index set $S$. The enumeration of these $(S,r)$-partitions leads to the introduction of $(S,r)$-Stirling numbers, an extremely wide-ranging…

Combinatorics · Mathematics 2018-12-03 Beáta Bényi , Miguel Méndez , José L. Ramírez , Tanay Wakhare

We first observe that the relations of the canonical generating isometries of the Cuntz algebra ${\cal O}_N$ are naturally related to the $N$-colored Catalan numbers. For a directed graph $G$, we generalize the Catalan numbers by using the…

Operator Algebras · Mathematics 2007-05-23 Kengo Matsumoto

Generalizing a sequence of Lambert, Cayley and Ramanujan, Chapoton has recently introduced a polynomial sequence Q_n:=Q_n(x,y,z,t) defined by Q_1=1, Q_{n+1}=[x+nz+(y+t)(n+y\partial_y)]Q_n. In this paper we prove Chapoton's conjecture on the…

Combinatorics · Mathematics 2011-03-25 Victor J. W. Guo , Jiang Zeng

In this paper we investigate undirected discrete graphical tree models when all the variables in the system are binary, where leaves represent the observable variables and where all the inner nodes are unobserved. A novel approach based on…

Statistics Theory · Mathematics 2012-03-06 Piotr Zwiernik , Jim Q. Smith

Disanto, Ferrari, Pinzani and Rinaldi have introduced the concept of 'Catalan pair', which is a pair of partial orders (S,R) satisfying certain axioms. They have shown that Catalan pairs provide a natural description of objects belonging to…

Combinatorics · Mathematics 2015-01-22 Vít Jelínek

We continue our reformulation of free dendriform algebras, dealing this time with the free dendriform trialgebra generated be Y over planar rooted trees. We propose a 'deformation' of a vectorial coding used in Part I, giving a LL-lattice…

Combinatorics · Mathematics 2007-05-23 Leroux Philippe

Fully bracketed implication terms on $n$ variables are evaluated in G\"odel $m$-valued logic on a finite chain, and we enumerate truth-table rows by output value across all Catalan bracketings. Using the Catalan decomposition, we derive a…

Combinatorics · Mathematics 2026-02-19 Volkan Yildiz

Given a coprime pair $(m,n)$ of positive integers, rational Catalan numbers $\frac{1}{m+n} \binom{m+n}{m,n}$ counts two combinatorial objects:rational $(m,n)$-Dyck paths are lattice paths in the $m\times n$ rectangle that never go below the…

Combinatorics · Mathematics 2015-04-22 Guoce Xin

The aim of this chapter is to provide an adequate graph theoretic framework for the description of periodic bifurcations which have recently been discovered in descendant trees of finite p-groups. The graph theoretic concepts of rooted…

Group Theory · Mathematics 2017-01-30 Daniel C. Mayer

Planar graphs and their spatial embedding -- planar maps -- are used in many different fields due to their ubiquity in the real world (leaf veins in biology, street patterns in urban studies, etc.) and are also fundamental objects in…

Statistical Mechanics · Physics 2018-12-12 Alexandre Diet , Marc Barthelemy

We investigate the tree gonality of a genus-$g$ metric graph, defined as the minimum degree of a tropical morphism from any tropical modification of the metric graph to a metric tree. We give a combinatorial constructive proof that this…

Combinatorics · Mathematics 2020-07-31 Jan Draisma , Alejandro Vargas

The Catalan numbers $C_k$ were first studied by Euler, in the context of enumerating triangulations of polygons $P_{k+2}$. Among the many generalizations of this sequence, the Fuss-Catalan numbers $C^{(d)}_k$ count enumerations of…

Combinatorics · Mathematics 2016-03-09 Alison Schuetz , Gwyneth Whieldon

We introduce a kind of $(p, q, t)$-Catalan numbers of Type A by generalizing the Jacobian type continued fraction formula, we proved that the corresponding expansions could be expressed by the polynomials counting permutations on…

Combinatorics · Mathematics 2023-05-09 Bin Han , Qiongqiong Pan

Taking a Feynman categorical perspective, several key aspects of the geometry of surfaces are deduced from combinatorial constructions with graphs. This provides a direct route from combinatorics of graphs to string topology operations via…

Algebraic Topology · Mathematics 2022-01-26 Clemens Berger , Ralph M. Kaufmann

This note is dedicated to presenting a polynomial analogue of $(n+1)!C_n=2^n(2n-1)!!$ (with $C_n$ as the $n$-th Catalan number) in the context of labeled plane trees and increasing plane trees, based on the definition of improper edges in…

Combinatorics · Mathematics 2025-10-06 Lora R. Du , Kathy Q. Ji , Dax T. X. Zhang

Tree-child networks are a recently-described class of directed acyclic graphs that have risen to prominence in phylogenetics (the study of evolutionary trees and networks). Although these networks have a number of attractive mathematical…

Probability · Mathematics 2023-01-10 François Bienvenu , Amaury Lambert , Mike Steel

The number of tree-rooted maps, that is, rooted planar maps with a distinguished spanning tree, of size $n$ is C(n)C(n+1) where C(n)=binomial(2n,n)/(n+1) is the nth Catalan number. We present a (long awaited) simple bijection which explains…

Combinatorics · Mathematics 2009-06-18 Olivier Bernardi

In this note we consider ternary trees naturally embedded in the plane in a deterministic way such that the root has position zero, or in other words label zero, and the children of a node with position $j$ have positions $j-1$, $j$, and…

Combinatorics · Mathematics 2009-03-09 Markus Kuba

Set-valued standard Young tableaux are a generalization of standard Young tableaux due to Buch (2002) with applications in algebraic geometry. The enumeration of set-valued SYT is significantly more complicated than in the ordinary case,…

Combinatorics · Mathematics 2024-10-08 Alexander Lazar , Svante Linusson
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