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We describe a scalable database cluster for the spatial analysis and annotation of high-throughput brain imaging data, initially for 3-d electron microscopy image stacks, but for time-series and multi-channel data as well. The system was…

High energy physics experiments including those at the Tevatron and the upcoming LHC require analysis of large data sets which are best handled by distributed computation. We present the design and development of a distributed data analysis…

Distributed, Parallel, and Cluster Computing · Computer Science 2007-05-23 Jeremiah Mans , David Bengali

At this moment, databanks worldwide contain brain images of previously unimaginable numbers. Combined with developments in data science, these massive data provide the potential to better understand the genetic underpinnings of brain…

Machine Learning · Statistics 2025-01-30 Santiago Silva , Boris Gutman , Eduardo Romero , Paul M Thompson , Andre Altmann , Marco Lorenzi

The growth of the amount of medical image data produced on a daily basis in modern hospitals forces the adaptation of traditional medical image analysis and indexing approaches towards scalable solutions. The number of images and their…

Distributed, Parallel, and Cluster Computing · Computer Science 2015-10-26 Dimitrios Markonis , Roger Schaer , Ivan Eggel , Henning Müller , Adrien Depeursinge

The emergence of cloud computing has enabled an incredible growth in available hardware resources at very low costs. These resources are being increasingly utilized by corporations for scalable analysis of "big data" problems. In this work,…

Distributed, Parallel, and Cluster Computing · Computer Science 2012-08-14 Esha Sahai , Tuhin Sahai

Hadoop and Spark are widely used distributed processing frameworks for large-scale data processing in an efficient and fault-tolerant manner on private or public clouds. These big-data processing systems are extensively used by many…

Databases · Computer Science 2017-07-07 Shlomi Dolev , Patricia Florissi , Ehud Gudes , Shantanu Sharma , Ido Singer

Understanding brain connectivity in a network-theoretic context has shown much promise in recent years. This type of analysis identifies brain organisational principles, bringing a new perspective to neuroscience. At the same time, large…

Neural and Evolutionary Computing · Computer Science 2016-11-28 Sarah Parisot , Jonathan Passerat-Palmbach , Markus D. Schirmer , Boris Gutman

Human brain atlases provide spatial reference systems for data characterizing brain organization at different levels, coming from different brains. Cytoarchitecture is a basic principle of the microstructural organization of the brain, as…

Image and Video Processing · Electrical Eng. & Systems 2021-07-07 Christian Schiffer , Hannah Spitzer , Kai Kiwitz , Nina Unger , Konrad Wagstyl , Alan C. Evans , Stefan Harmeling , Katrin Amunts , Timo Dickscheid

MapReduce is a technique used to vastly improve distributed processing of data and can massively speed up computation. Hadoop and its MapReduce relies on JVM and Java which is expensive on memory. High Performance Computing based MapReduce…

Distributed, Parallel, and Cluster Computing · Computer Science 2020-06-29 Vignesh S. , Muthumanikandan V. , Siddarth S. , Sainath G

The use of functional brain imaging for research and diagnosis has benefitted greatly from the recent advancements in neuroimaging technologies, as well as the explosive growth in size and availability of fMRI data. While it has been shown…

Data Structures and Algorithms · Computer Science 2017-08-10 Milad Makkie , Xiang Li , Binbin Lin , Jieping Ye , Mojtaba Sedigh Fazli , Tianming Liu , Shannon Quinn

This paper describes an effective and efficient image classification framework nominated distributed deep representation learning model (DDRL). The aim is to strike the balance between the computational intensive deep learning approaches…

Computer Vision and Pattern Recognition · Computer Science 2016-07-05 Le Dong , Na Lv , Qianni Zhang , Shanshan Xie , Ling He , Mengdie Mao

Hadoop is an open source implementation of the MapReduce Framework in the realm of distributed processing. A Hadoop cluster is a unique type of computational cluster designed for storing and analyzing large data sets across cluster of…

Distributed, Parallel, and Cluster Computing · Computer Science 2014-11-10 Muralikrishnan Ramane , Sharmila Krishnamoorthy , Sasikala Gowtham

The exponential rise in data generation has led to vast, heterogeneous datasets crucial for predictive analytics and decision-making. Ensuring data quality and semantic integrity remains a challenge. This paper presents a brain-inspired…

Machine Learning · Computer Science 2025-03-06 Ashwin Viswanathan Kannan , Johnson P Thomas , Abhimanyu Mukerji

The proliferation of sensor technologies and advancements in data collection methods have enabled the accumulation of very large amounts of data. Increasingly, these datasets are considered for scientific research. However, the design of…

Distributed, Parallel, and Cluster Computing · Computer Science 2020-07-28 Fatemeh Rouzbeh , Ananth Grama , Paul Griffin , Mohammad Adibuzzaman

Machine Learning (ML) techniques are indispensable in a wide range of fields. Unfortunately, the exponential increase of dataset sizes are rapidly extending the runtime of sequential algorithms and threatening to slow future progress in ML.…

Machine Learning · Computer Science 2011-07-06 Yucheng Low , Joseph Gonzalez , Aapo Kyrola , Danny Bickson , Carlos Guestrin

Recently we create so much data (2.5 quintillion bytes every day) that 90% of the data in the world today has been created in the last two years alone [1]. This data comes from sensors used to gather traffic or climate information, posts to…

Distributed, Parallel, and Cluster Computing · Computer Science 2016-12-20 Afsin Akdogan , Hien To

Hadoop is a popular MapReduce framework for developing parallel applications in distributed environments. Several advantages of MapReduce such as programming ease and ability to use commodity hardware make the applicability of soft…

Distributed, Parallel, and Cluster Computing · Computer Science 2018-02-13 Güngör Yildirim , İbrahim R Hallac , Galip Aydin , Yetkin Tatar

We consider the recently proposed Coded Distributed Computing (CDC) framework that leverages carefully designed redundant computations to enable coding opportunities that substantially reduce the communication load of distributed computing.…

Distributed, Parallel, and Cluster Computing · Computer Science 2017-09-04 Mehrdad Kiamari , Chenwei Wang , A. Salman Avestimehr

MapReduce, the popular programming paradigm for large-scale data processing, has traditionally been deployed over tightly-coupled clusters where the data is already locally available. The assumption that the data and compute resources are…

Distributed, Parallel, and Cluster Computing · Computer Science 2012-07-31 Benjamin Heintz , Abhishek Chandra , Ramesh K. Sitaraman

The emerging field of connectomics aims to unlock the mysteries of the brain by understanding the connectivity between neurons. To map this connectivity, we acquire thousands of electron microscopy (EM) images with nanometer-scale…

Quantitative Methods · Quantitative Biology 2016-04-04 Stephen M. Plaza , Stuart E. Berg
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