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In the field of graph signal processing (GSP), directed graphs present a particular challenge for the "standard approaches" of GSP to due to their asymmetric nature. The presence of negative- or complex-weight directed edges, a graphical…

Signal Processing · Electrical Eng. & Systems 2020-03-03 Kevin Schultz , Marisel Villafane-Delgado

Identifying causal relationships among distinct brain areas, known as effective connectivity, holds key insights into the brain's information processing and cognitive functions. Electroencephalogram (EEG) signals exhibit intricate dynamics…

Signal Processing · Electrical Eng. & Systems 2023-07-20 Peizhen Yang , Xinke Shen , Zongsheng Li , Zixiang Luo , Kexin Lou , Quanying Liu

Dynamic functional connectivity is an effective measure for the brain's responses to continuous stimuli. We propose an inferential method to detect the dynamic changes of brain networks based on time-varying graphical models. Whereas most…

Applications · Statistics 2020-06-23 Dingjue Ji , Junwei Lu , Yiliang Zhang , Hongyu Zhao , Siyuan Gao

Transition-based parsers implemented with Pointer Networks have become the new state of the art in dependency parsing, excelling in producing labelled syntactic trees and outperforming graph-based models in this task. In order to further…

Computation and Language · Computer Science 2020-05-29 Daniel Fernández-González , Carlos Gómez-Rodríguez

We extend recent theoretical approximations describing the transition to synchronization in large undirected networks of coupled phase oscillators to the case of directed networks. We also consider extensions to networks with mixed…

Statistical Mechanics · Physics 2009-11-11 Juan G. Restrepo , Edward Ott , Brian R. Hunt

The paper investigates the link between Granger causality graphs recently formalized by Eichler and directed information theory developed by Massey and Kramer. We particularly insist on the implication of two notions of causality that may…

Information Theory · Computer Science 2012-03-27 Pierre-Olivier Amblard , Olivier J. J. Michel

Functional connectivity (FC) refers to the investigation of interactions between brain regions to understand integration of neural activity in several regions. FC is often estimated using functional magnetic resonance images (fMRI). There…

Applications · Statistics 2023-01-24 Nathan Tung , Jerome Sanes , Eli Upfal , Ani Eloyan

In an intelligent transportation system, the effects and relations of traffic flow at different points in a network are valuable features which can be exploited for control system design and traffic forecasting. In this paper, we define the…

Systems and Control · Electrical Eng. & Systems 2020-11-24 Sina Molavipour , Germán Bassi , Mladen Čičić , Mikael Skoglund , Karl Henrik Johansson

Syntactic Transformer language models aim to achieve better generalization through simultaneously modeling syntax trees and sentences. While prior work has been focusing on adding constituency-based structures to Transformers, we introduce…

Computation and Language · Computer Science 2024-07-25 Yida Zhao , Chao Lou , Kewei Tu

We advance our approach of analyzing the dynamics of interacting complex systems with the nonlinear dynamics of interacting nonlinear elements. We replace the widely used lattice-like connection topology of cellular neural networks (CNN) by…

Neurons and Cognition · Quantitative Biology 2016-10-10 Henning Dickten , Christian E. Elger , Klaus Lehnertz

Neuronal dynamics are fundamentally constrained by the underlying structural network architecture, yet much of the details of this synaptic connectivity are still unknown even in neuronal cultures in vitro. Here we extend a previous…

Neurons and Cognition · Quantitative Biology 2017-02-08 Javier G. Orlandi , Olav Stetter , Jordi Soriano , Theo Geisel , Demian Battaglia

A systematic assessment of global neural network connectivity through direct electrophysiological assays has remained technically unfeasible even in dissociated neuronal cultures. We introduce an improved algorithmic approach based on…

Neurons and Cognition · Quantitative Biology 2015-06-03 Olav Stetter , Demian Battaglia , Jordi Soriano , Theo Geisel

Graph topology inference of network processes with co-evolving and interacting time-series is crucial for network studies. Vector autoregressive models (VAR) are popular approaches for topology inference of directed graphs; however, in…

Machine Learning · Computer Science 2020-11-18 M. Ali Vosoughi , Axel Wismuller

Understanding the dynamic nature of brain connectivity is critical for elucidating neural processing, behavior, and brain disorders. Traditional approaches such as sliding-window correlation (SWC) characterize time-varying undirected…

Neurons and Cognition · Quantitative Biology 2026-02-19 Nan Xu , Xiaodi Zhang , Wen-Ju Pan , Jeremy L. Smith , Eric H. Schumacher , Jason W. Allen , Vince D. Calhoun , Shella D. Keilholz

Recently, the potential of dynamic brain networks as a neuroimaging biomarkers for mental illnesses is being increasingly recognized. However, there are several unmet challenges in developing such biomarkers, including the need for methods…

Neurons and Cognition · Quantitative Biology 2019-10-10 Suprateek Kundu , Jin Ming , Jennifer Stevens

Deep-learning density functional theory (DFT) shows great promise to significantly accelerate material discovery and potentially revolutionize materials research. However, current research in this field primarily relies on data-driven…

Computational Physics · Physics 2024-08-14 Yang Li , Zechen Tang , Zezhou Chen , Minghui Sun , Boheng Zhao , He Li , Honggeng Tao , Zilong Yuan , Wenhui Duan , Yong Xu

Dynamic functional connectivity (DFC) analysis involves measuring correlated neural activity over time across multiple brain regions. Significant regional correlations among neural signals, such as those obtained from resting-state…

Link prediction is a widely studied task in Graph Representation Learning (GRL) for modeling relational data. The early theories in GRL were based on the assumption of a symmetric adjacency matrix, reflecting an undirected setting. As a…

Machine Learning · Computer Science 2025-02-24 Jun Zhai , Muberra Ozmen , Thomas Markovich

We introduce the Circular Directional Flow Decomposition (CDFD), a new framework for analyzing circularity in weighted directed networks. CDFD separates flow into two components: a circular (divergence-free) component and an acyclic…

Physics and Society · Physics 2025-06-17 Marc Homs-Dones , Robert S. MacKay , Bazil Sansom , Yijie Zhou

The description of the dynamics of complex systems, in particular the capture of the interaction structure and causal relationships between elements of the system, is one of the central questions of interdisciplinary research. While the…

Machine Learning · Statistics 2025-04-30 Jakub Kořenek , Pavel Sanda , Jaroslav Hlinka