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Accurate physical modeling with 3D-printing techniques could lead to new approaches to study structure and dynamics of biological systems complementing computational methods. Computational biology has become an important part of research…

Other Computer Science · Computer Science 2015-07-14 Promita Chakraborty

Synthetic Biology is the new engineering-based approach to biology that includes applications of designing complex biological devices. At present, it is not yet clear what will emerge as the defining principles of Synthetic Biology. One…

Quantitative Methods · Quantitative Biology 2011-03-30 A. X. C. N. Valente , Stephen S. Fong

Organogenesis involves large deformations and complex shape changes that require elaborate mechanical regulation. Models of tissue biomechanics have been introduced to account for the coupling between mechanical response and biochemical…

Soft Condensed Matter · Physics 2025-04-16 Patrick W. Alford , Luiza Angheluta , Jorge Vinals

Machine Science, or Data-driven Research, is a new and interesting scientific methodology that uses advanced computational techniques to identify, retrieve, classify and analyse data in order to generate hypotheses and develop models. In…

Information Retrieval · Computer Science 2010-08-24 T W Kelsey , W H B Wallace

Synthetic biology is a recent area of biological engineering, whose aim is to provide cells with novel functionalities. A number of important results regarding the development of control circuits in synthetic biology have been achieved…

Systems and Control · Electrical Eng. & Systems 2024-11-11 Antón Pardo , Sandra Díaz Seoane , Dorin A. Ionescu , Antonis Papachristodoulou , Alejandro F. Villaverde

In recent years, four-dimensional (4D) fabrication has emerged as a powerful technology capable of revolutionizing the field of tissue engineering. This technology represents a shift in perspective from traditional tissue engineering…

Medical Physics · Physics 2025-01-15 Lorenzo Bonetti , Giulia Scalet

Protein design has the potential to revolutionize biotechnology and medicine. While most efforts have focused on proteins with well-defined structures, increased recognition of the functional significance of intrinsically disordered…

Biomolecules · Quantitative Biology 2025-09-17 Giulio Tesei , Francesco Pesce , Kresten Lindorff-Larsen

Machine learning is increasingly recognized as a promising technology in the biological, biomedical, and behavioral sciences. There can be no argument that this technique is incredibly successful in image recognition with immediate…

There is an unmet need for artificial intelligence techniques that can speed up the design of growth strategies for cultured tissues. Cultured tissue is increasingly important for a range of applications such as cultivated meat,…

Biological Physics · Physics 2025-08-04 Allison E. Andrews , Hugh Dickinson , James P. Hague

Recent progress in artificial intelligence (AI) using deep learning techniques has triggered its wide-scale use across a broad range of applications. These systems can already perform tasks such as natural language processing of voice and…

Computers and Society · Computer Science 2019-10-29 P. Santhanam , Eitan Farchi , Victor Pankratius

Synthetic biology and bioengineering provide the opportunity to create novel embodied cognitive systems (otherwise known as minds) in a very wide variety of chimeric architectures combining evolved and designed material and software. These…

Tissues and Organs · Quantitative Biology 2022-01-26 Michael Levin

Provided that there is no theoretical frame for complex engineered systems (CES) as yet, this paper claims that bio-inspired engineering can help provide such a frame. Within CES bio-inspired systems play a key role. The disclosure from…

Other Computer Science · Computer Science 2011-10-18 Nelson Alfonso Gómez-Cruz , Carlos Eduardo Maldonado

The discipline of `theoretical biology' has been developing from its inception several decades ago almost in parallel with the advances in biology, so much so that the latter is often considered to be almost exclusively an empirical…

Biological Physics · Physics 2025-06-10 Shakti N. Menon , Sitabhra Sinha

Digital Engineering currently relies on costly and often bespoke integration of disparate software products to assemble the authoritative source of truth of the system-of-interest. Tools not originally designed to work together become an…

Systems and Control · Electrical Eng. & Systems 2024-01-05 James S. Wheaton , Daniel R. Herber

This paper explores Site Reliability Engineering (SRE), a modern approach to maintaining scalable and reliable software systems. It presents observations on how structured SRE processes improve operational efficiency, reduce system…

Software Engineering · Computer Science 2025-05-06 Balaram Puli

The evolution of various competing cell types in tissues, and the resulting persistent tissue population, is studied numerically and analytically in a particle-based model of active tissues. Mutations change the properties of cells in…

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Model-Driven Engineering (MDE) provides a huge body of knowledge of automation for many different engineering tasks, especially those involving transitioning from design to implementation. With the huge progress made in Artificial…

Software Engineering · Computer Science 2025-02-11 Lola Burgueño , Davide Di Ruscio , Houari Sahraoui , Manuel Wimmer

AI is a magnificent field that directly and profoundly touches on numerous disciplines ranging from philosophy, computer science, engineering, mathematics, decision and data science and economics, to cognitive science, neuroscience and…

Computers and Society · Computer Science 2024-10-16 Simon Kasif

Deep eutectic systems (DES) have received considerable attention in the past 5 years of research. Up to 2013 little had been explored over these systems both in which concerns fundamentals and applications. The definition of a deep eutectic…

Chemical Physics · Physics 2020-01-29 Alexandre Paiva , Ana A. Matias , Ana Rita C. Duarte

The engineering and design of self-organizing systems with emergent properties is a long-standing problem in the field of complex and distributed systems, for example in the engineering of self-organizing Multi-Agent Systems. The problem of…

Adaptation and Self-Organizing Systems · Physics 2007-05-23 Jochen Fromm