Related papers: A faster algorithm for the discrete Fr\'echet dist…
The {\em edit distance} between two ordered trees with vertex labels is the minimum cost of transforming one tree into the other by a sequence of elementary operations consisting of deleting and relabeling existing nodes, as well as…
Let $P$ be a convex polygon in the plane, and let $T$ be a triangulation of $P$. An edge $e$ in $T$ is called a diagonal if it is shared by two triangles in $T$. A flip of a diagonal $e$ is the operation of removing $e$ and adding the…
Edit distance is a measure of similarity of two strings based on the minimum number of character insertions, deletions, and substitutions required to transform one string into the other. The edit distance can be computed exactly using a…
We study two fundamental problems dealing with curves in the plane, namely, the nearest-neighbor problem and the center problem. Let $\mathcal{C}$ be a set of $n$ polygonal curves, each of size $m$. In the nearest-neighbor problem, the goal…
We show that the edit distance between two run-length encoded strings of compressed lengths $m$ and $n$ respectively, can be computed in $\mathcal{O}(mn\log(mn))$ time. This improves the previous record by a factor of…
We consider the RMS distance (sum of squared distances between pairs of points) under translation between two point sets in the plane, in two different setups. In the partial-matching setup, each point in the smaller set is matched to a…
The classical measure of similarity between two polygonal chains in Euclidean space is the Fr\'echet distance, which corresponds to the coordinated motion of two mobile agents along the chains while minimizing their maximum distance. As…
We engineer an algorithm to solve the approximate dictionary matching problem. Given a list of words $\mathcal{W}$, maximum distance $d$ fixed at preprocessing time and a query word $q$, we would like to retrieve all words from…
Map matching is a common task when analysing GPS tracks, such as vehicle trajectories. The goal is to match a recorded noisy polygonal curve to a path on the map, usually represented as a geometric graph. The Fr\'echet distance is a…
Optimal transport (OT) is a popular tool in machine learning to compare probability measures geometrically, but it comes with substantial computational burden. Linear programming algorithms for computing OT distances scale cubically in the…
Fourier transformation is an extensively studied problem in many research fields. It has many applications in machine learning, signal processing, compressed sensing, and so on. In many real-world applications, approximated Fourier…
We consider the approximate pattern matching problem under the edit distance. Given a text $T$ of length $n$, a pattern $P$ of length $m$, and a threshold $k$, the task is to find the starting positions of all substrings of $T$ that can be…
Approximate Pattern Matching is among the most fundamental string-processing tasks. Given a text $T$ of length $n$, a pattern $P$ of length $m$, and a threshold $k$, the task is to identify the fragments of $T$ that are at distance at most…
The distance transform algorithm is popular in computer vision and machine learning domains. It is used to minimize quadratic functions over a grid of points. Felzenszwalb and Huttenlocher (2004) describe an O(N) algorithm for computing the…
The edit distance is a way of quantifying how similar two strings are to one another by counting the minimum number of character insertions, deletions, and substitutions required to transform one string into the other. In this paper we…
The problem of approximate string matching is important in many different areas such as computational biology, text processing and pattern recognition. A great effort has been made to design efficient algorithms addressing several variants…
We investigate the problem of testing the equivalence between two discrete histograms. A {\em $k$-histogram} over $[n]$ is a probability distribution that is piecewise constant over some set of $k$ intervals over $[n]$. Histograms have been…
We propose smooth $q$-gram, the first variant of $q$-gram that captures $q$-gram pair within a small edit distance. We apply smooth $q$-gram to the problem of detecting overlapping pairs of error-prone reads produced by single molecule real…
In the field of topological data analysis, persistence modules are used to express geometrical features of data sets. The matching distance $d_\mathcal{M}$ measures the difference between $2$-parameter persistence modules by taking the…
We study several polygonal curve problems under the Fr\'{e}chet distance via algebraic geometric methods. Let $\mathbb{X}_m^d$ and $\mathbb{X}_k^d$ be the spaces of all polygonal curves of $m$ and $k$ vertices in $\mathbb{R}^d$,…