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Biochemical reaction networks are often modelled using discrete-state, continuous-time Markov chains. System statistics of these Markov chains usually cannot be calculated analytically and therefore estimates must be generated via…

Quantitative Methods · Quantitative Biology 2016-04-19 Daniel Wilson , Ruth E. Baker

Bayesian variable selection regression (BVSR) is able to jointly analyze genome-wide genetic datasets, but the slow computation via Markov chain Monte Carlo (MCMC) hampered its wide-spread usage. Here we present a novel iterative method to…

Computation · Statistics 2018-07-31 Quan Zhou , Yongtao Guan

Most convex and nonconvex clustering algorithms come with one crucial parameter: the $k$ in $k$-means. To this day, there is not one generally accepted way to accurately determine this parameter. Popular methods are simple yet theoretically…

Machine Learning · Computer Science 2021-08-04 Sibylle Hess , Wouter Duivesteijn

We develop the max-plus finite element method to solve finite horizon deterministic optimal control problems. This method, that we introduced in a previous work, relies on a max-plus variational formulation, and exploits the properties of…

Optimization and Control · Mathematics 2016-11-18 Marianne Akian , Stephane Gaubert , Asma Lakhoua

Maximum A Posteriori inference in graphical models is often solved via message-passing algorithms, such as the junction-tree algorithm, or loopy belief-propagation. The exact solution to this problem is well known to be exponential in the…

Artificial Intelligence · Computer Science 2010-04-09 Julian J. McAuley , Tiberio S. Caetano

Given a graph $G$ of degree $k$ over $n$ vertices, we consider the problem of computing a near maximum cut or a near minimum bisection in polynomial time. For graphs of girth $2L$, we develop a local message passing algorithm whose…

Probability · Mathematics 2023-02-06 Ahmed El Alaoui , Andrea Montanari , Mark Sellke

In this work, we extend the fractional linear multistep methods in [C. Lubich, SIAM J. Math. Anal., 17 (1986), pp.704--719] to the tempered fractional integral and derivative operators in the sense that the tempered fractional derivative…

Numerical Analysis · Mathematics 2018-12-11 Ling Guo , Fanhai Zeng , Ian Turner , Kevin Burrage , George Em Karniadakis

We revisit the \textsc{$k$-Secluded Tree} problem. Given a vertex-weighted undirected graph $G$, its objective is to find a maximum-weight induced subtree $T$ whose open neighborhood has size at most $k$. We present a fixed-parameter…

Data Structures and Algorithms · Computer Science 2022-06-27 Huib Donkers , Bart M. P. Jansen , Jari J. H. de Kroon

$k$-Coloring Reconfiguration is one of the most well-studied reconfiguration problems, which asks to transform a given proper $k$-coloring of a graph to another by repeatedly recoloring a single vertex. Its approximate version, Maxmin…

Computational Complexity · Computer Science 2025-04-01 Shuichi Hirahara , Naoto Ohsaka

The subspace method is one of the mainstream system identification method of linear systems, and its basic idea is to estimate the system parameter matrices by projecting them into a subspace related to input and output. However, most of…

Systems and Control · Electrical Eng. & Systems 2022-02-03 Xiangyu Mao , Jianping He , Chengcheng Zhao

The maximum-entropy principle (Max-Ent) is a valuable and extensively used tool in statistical mechanics and quantum information theory. It provides a method for inferring the state of a system by utilizing a reduced set of parameters…

Quantum Physics · Physics 2024-03-01 F. T. B. Pérez , J. M. Matera

We consider the problem of minimizing the composition of a smooth (nonconvex) function and a smooth vector mapping, where the inner mapping is in the form of an expectation over some random variable or a finite sum. We propose a stochastic…

Optimization and Control · Mathematics 2019-06-26 Junyu Zhang , Lin Xiao

The study of accurate methods to estimate the distribution of stellar rotational velocities is important for understanding many aspects of stellar evolution. From such observations we obtain the projected rotational speed v sin(i) in order…

Solar and Stellar Astrophysics · Physics 2019-03-20 Rafael Orellana , Pedro Escarate , Michel Cure , Alejandra Christen , Rodrigo Carvajal , Juan Carlos Agüero

Despite their successes, deep neural networks may make unreliable predictions when faced with test data drawn from a distribution different to that of the training data, constituting a major problem for AI safety. While this has recently…

Machine Learning · Computer Science 2020-07-16 Erik Daxberger , José Miguel Hernández-Lobato

The last decade has seen max-stable processes emerge as a common tool for the statistical modeling of spatial extremes. However, their application is complicated due to the unavailability of the multivariate density function, and so…

Methodology · Statistics 2009-02-23 Simone A. Padoan , Mathieu Ribatet , Scott A. Sisson

Computing routing schemes that support both high throughput and low latency is one of the core challenges of network optimization. Such routes can be formalized as $h$-length flows which are defined as flows whose flow paths are restricted…

Data Structures and Algorithms · Computer Science 2023-08-21 Bernhard Haeupler , D Ellis Hershkowitz , Thatchaphol Saranurak

Variational Bayesian (VB) methods produce posterior inference in a time frame considerably smaller than traditional Markov Chain Monte Carlo approaches. Although the VB posterior is an approximation, it has been shown to produce good…

Computation · Statistics 2019-08-02 Nathaniel Tomasetti , Catherine S. Forbes , Anastasios Panagiotelis

Finding the optimal hyperparameters of a model can be cast as a bilevel optimization problem, typically solved using zero-order techniques. In this work we study first-order methods when the inner optimization problem is convex but…

We establish numerical methods for solving the martingale optimal transport problem (MOT) - a version of the classical optimal transport with an additional martingale constraint on transport's dynamics. We prove that the MOT value can be…

Probability · Mathematics 2019-04-08 Gaoyue Guo , Jan Obloj

We introduce the concept of compressed convolution, a technique to convolve a given data set with a large number of non-orthogonal kernels. In typical applications our technique drastically reduces the effective number of computations. The…

Instrumentation and Methods for Astrophysics · Physics 2014-01-08 F. Elsner , B. D. Wandelt
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