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The evolution, regulation and sustenance of biological complexity is determined by protein-protein interaction network that is filled with dynamic events. Recent experimental evidences point out that clustering of proteins has a vital role…

Tissues and Organs · Quantitative Biology 2007-05-23 RV Krishnan

Damage spreading for 2D Ising cluster dynamics is investigated numerically by using random numbers in a way that conforms with the notion of submitting the two evolving replicas to the same thermal noise. Two damage spreading transitions…

Statistical Mechanics · Physics 2007-05-23 Haye Hinrichsen , Eytan Domany , Dietrich Stauffer

Isotopic spin dependent lattice gas model is used to examine if it produces the isoscaling behaviour seen in intermediate energy heavy ion collisions. Qualitative features are reproduced but quantitative agreement with experiments is…

Nuclear Theory · Physics 2008-11-26 C. B. Das , S. Das Gupta

The site percolation on the triangular lattice stands out as one of the few exactly solved statistical systems. By initially configuring critical percolation clusters of this model and randomly reassigning the color of each percolation…

Statistical Mechanics · Physics 2024-09-20 Ming Li , Youjin Deng

We describe a 3D percolation-type approach to modeling of the processes of aging and certain other properties of tissues analyzed as systems consisting of interacting cells. Lattice sites are designated as regular (healthy) cells, senescent…

Statistical Mechanics · Physics 2016-07-12 Vyacheslav Gorshkov , Vladimir Privman , Sergiy Libert

Percolation in systems made up of randomly placed impermeable grains is often examined in the context of system spanning clusters of connected solids forming above a relatively low critical grain density $\rho_{c1}$ or networks of…

Disordered Systems and Neural Networks · Physics 2025-10-10 D. J. Priour

The use of machine learning techniques in classical and quantum systems has led to novel techniques to classify ordered and disordered phases, as well as uncover transition points in critical phenomena. Efforts to extend these methods to…

Physics and Society · Physics 2023-10-10 Sayat Mimar , Gourab Ghoshal

We investigate the Ising model on a spherical surface, utilizing a Fibonacci lattice to approximate uniform coverage. This setup poses challenges in achieving consistent lattice distribution across the sphere for comparison with planar…

Computational Physics · Physics 2025-12-09 Zheng Zhou , Chen-Hui Song , Xu-Yang Hou , Hao Guo

We investigate the maximum caliber variational principle as an inference algorithm used to predict dynamical properties of complex nonequilibrium, stationary, statistical systems in the presence of incomplete information. Specifically, we…

Statistical Mechanics · Physics 2016-12-28 Carlo Cafaro , Sean Alan Ali

Motivated by the possible applications that a better understanding of consciousness might bring, we follow Tononi's idea and calculate analytically a complexity index for two systems of Ising spins with parallel update dynamics, the…

Statistical Mechanics · Physics 2023-04-28 Otavio Citton , Nestor Caticha

Experiments and computer simulation studies have revealed existence of rich dynamics in the orientational relaxation of molecules in confined systems such as water in reverse micelles, cyclodextrin cavities and nano-tubes. Here we introduce…

Statistical Mechanics · Physics 2015-05-18 Rajib Biswas , Biman Bagchi

We approximate a 2D Ising spin glass by tiling an infinite square lattice with large identical unit cells. The interactions within the unit cell are random. Each such sample shows one or more critical points. We examine the scaling of the…

Disordered Systems and Neural Networks · Physics 2009-10-30 David A Huse , Lee-Fen Ko

Critical phenomena of a second-order percolation transition are known to be independent of cluster merging or pruning process. However, those of a hybrid percolation transition (HPT), mixed properties of both first-order and second-order…

Statistical Mechanics · Physics 2020-03-10 Jinha Park , Sudo Yi , K. Choi , Deokjae Lee , B. Kahng

We consider the percolation problem in the high-temperature Ising model on the two-dimensional square lattice at or near critical external fields. The incipient infinite cluster (IIC) measure in the sense of Kesten is constructed. As a…

Probability · Mathematics 2013-07-30 Yasunari Higuchi , Kazunari Kinoshita , Masato Takei , Yu Zhang

We argue that clustering of color sources, leading to the percolation transition, may be the way to achieve deconfinement in heavy ion collisions. The critical density for percolation is related to the effective critical temperature of the…

High Energy Physics - Phenomenology · Physics 2008-11-26 J. Dias de Deus , C. Pajares

The capacity to integrate information is a prominent feature of biological and cognitive systems. Integrated Information Theory (IIT) provides a mathematical approach to quantify the level of integration in a system, yet its computational…

Neurons and Cognition · Quantitative Biology 2020-08-31 Miguel Aguilera , Ezequiel Di Paolo

In this work we demonstrate the ability of the Minimal Spanning Tree to duplicate the information contained within a percolation analysis for a point dataset. We show how to construct the percolation properties from the Minimal Spanning…

Astrophysics · Physics 2015-06-24 S. P. Bhavsar , R. J. Splinter

Percolation refers to an interesting class of problems related to the properties of disordered systems, usually formulated in terms of objects randomly placed on an underlying lattice or continuum. Despite the simplicity of the setup, most…

Statistical Mechanics · Physics 2022-02-22 Abraham Levitan

We propose two different approaches for introducing the information temperature of the binary N-th order Markov chains. The first approach is based on comparing the Markov sequences with the equilibrium Ising chains at given temperatures.…

Data Analysis, Statistics and Probability · Physics 2022-10-05 O. V. Usatenko , S. S. Melnyk , G. M. Pritula , V. A. Yampol'skii

We show that a collection of independent Ising spins evolving stochastically can display surprisingly large fluctuations towards ordered behaviour, as quantified by certain types of time-integrated plaquette observables, despite the…

Statistical Mechanics · Physics 2020-04-22 Loredana M. Vasiloiu , Tom H. E. Oakes , Federico Carollo , Juan P. Garrahan
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