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We consider a model of large regulatory gene expression networks where the thresholds activating the sigmoidal interactions between genes and the signs of these interactions are shuffled randomly. Such an approach allows for a qualitative…

Molecular Networks · Quantitative Biology 2007-05-23 D. Volchenkov , R. Lima

Flexible models for probability distributions are an essential ingredient in many machine learning tasks. We develop and investigate a new class of probability distributions, which we call a Squared Neural Family (SNEFY), formed by squaring…

Machine Learning · Computer Science 2023-10-27 Russell Tsuchida , Cheng Soon Ong , Dino Sejdinovic

We study the dynamics of phase synchronization in growing populations of discrete phase oscillatory systems when the division process is coupled to the distribution of oscillator phases. Using mean field theory, linear stability analysis,…

Statistical Mechanics · Physics 2015-06-16 Wen Yu , Kevin B. Wood

Power grid networks, as well as neuronal networks with synaptic plasticity, describe real-world systems of tremendous importance for our daily life. The investigation of these seemingly unrelated types of dynamical networks has attracted…

Adaptation and Self-Organizing Systems · Physics 2021-05-17 Rico Berner , Serhiy Yanchuk , Eckehard Schöll

We study the emergence of synchronisation in a chiral network of harmonic oscillators. The network consists of a set of locally incoherently pumped harmonic oscillators coupled pairwise in cascade with travelling field modes. Such cascaded…

There is enormous interest -- both mathematically and in diverse applications -- in understanding the dynamics of coupled oscillator networks. The real-world motivation of such networks arises from studies of the brain, the heart, ecology,…

Dynamical Systems · Mathematics 2023-08-22 Stephen Coombes , Mustafa Sayli , Rüdiger Thul , Rachel Nicks , Mason A Porter , Yi Ming Lai

Neuronal networks can present activity described by power-law distributed avalanches presumed to be a signature of a critical state. Here we study a random-neighbor network of excitable cellular automata coupled by dynamical synapses. The…

Adaptation and Self-Organizing Systems · Physics 2015-07-21 Ariadne de A. Costa , Mauro Copelli , Osame Kinouchi

Spiking neural network is a type of artificial neural network in which neurons communicate between each other with spikes. Spikes are identical Boolean events characterized by the time of their arrival. A spiking neuron has internal…

Neural and Evolutionary Computing · Computer Science 2016-02-16 Oleg Y. Sinyavskiy

We show the emergence of spontaneous synchronization between a pair of detuned quantum oscillators within a harmonic network. Our model does not involve any nonlinearity, driving, or external dissipation, thus providing the simplest…

We consider networks formed from two populations of identical oscillators, with uniform strength all-to-all coupling within populations, and also between populations, with a different strength. Such systems are known to support chimera…

Chaotic Dynamics · Physics 2019-08-28 Carlo R. Laing

While traditional feed-forward filter models can reproduce the rate responses of retinal ganglion neurons to simple stimuli, they cannot explain why synchrony between spikes is much higher than expected by Poisson firing [6], and can be…

Neurons and Cognition · Quantitative Biology 2020-05-07 Christopher Warner , Friedrich T. Sommer

We study a network model of two conductance-based pacemaker neurons of differing natural frequency, coupled with either mutual excitation or inhibition, and receiving shared random inhibitory synaptic input. The networks may phase-lock…

Neurons and Cognition · Quantitative Biology 2009-11-13 Ramana Dodla , Charles J. Wilson

We apply spatial dynamical-systems techniques to prove that certain spatiotemporal patterns in reversible reaction-diffusion equations undergo snaking bifurcations. That is, in a narrow region of parameter space, countably many branches of…

Dynamical Systems · Mathematics 2025-07-23 Timothy Roberts , Bjorn Sandstede

An interesting problem in synchronization is the study of coupled oscillators, wherein oscillators with different natural frequencies synchronize to a common frequency and equilibrium phase difference. In this paper, we investigate the…

Dynamical Systems · Mathematics 2014-05-13 Vishaal Krishnan , Arun D. Mahindrakar , Somashekhar S. Hiremath

When a simple excitable system is continuously stimulated by a Poissonian external source, the response function (mean activity versus stimulus rate) generally shows a linear saturating shape. This is experimentally verified in some classes…

Neurons and Cognition · Quantitative Biology 2007-05-23 Mauro Copelli , Paulo R. A. Campos

The Sachdev-Ye-Kitaev (SYK) model is a quantum mechanical model of fermions interacting with $q$-body random couplings. For $q=2$, it describes free particles, and is non-chaotic in the many-body sense, while for $q>2$ it is strongly…

Strongly Correlated Electrons · Physics 2018-07-19 Chunxiao Liu , Xiao Chen , Leon Balents

We study the dynamical regimes demonstrated by a pair of identical 3-element ring oscillators (reduced version of synthetic 3-gene genetic Repressilator) coupled using the design of the "quorum sensing (QS)" process natural for…

Biological Physics · Physics 2018-03-20 Edward H. Hellen , Evgeny Volkov

Motivated by the operation of myogenic (self-oscillatory) insect flight muscle, we study a model consisting of a large number of identical oscillatory contractile elements joined in a chain, whose end is attached to a damped mass-spring…

Biological Physics · Physics 2007-05-23 Andrej Vilfan , Thomas Duke

This paper uses 3D grain-scale finite element (FE) simulations to appraise the classical scattering theory of plane longitudinal wave propagation in untextured polycrystals with statistically equiaxed grains belonging to the seven crystal…

Materials Science · Physics 2022-08-10 Ming Huang , Stanislav I. Rokhlin , Michael J. S. Lowe

The standard pair approximation equations (PA) for the Susceptible-Infective-Recovered-Susceptible (SIRS) model of infection spread on a network of homogeneous degree $k$ predict a thin phase of sustained oscillations for parameter values…

Populations and Evolution · Quantitative Biology 2009-07-28 Ganna Rozhnova , Ana Nunes