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Many socio-economic and biological processes can be modeled as systems of interacting individuals. The behaviour of such systems can be often described within game-theoretic models. In these lecture notes, we introduce fundamental concepts…

Populations and Evolution · Quantitative Biology 2013-05-30 Jacek Miekisz

The dynamical arrest of gels is the consequence of a well defined structural phase transition, leading to the formation of a spanning cluster of bonded particles. The dynamical glass transition, instead, is not accompanied by any clear…

Soft Condensed Matter · Physics 2016-07-21 Raffaele Pastore , Antonio de Candia , Anallisa Fierro , Massimo Pica Ciamarra , Antonio Coniglio

We present a modelling framework for the dynamics of cells structured by the concentration of a micromolecule they contain. We derive general equations for the evolution of the cell population and of the extra-cellular concentration of the…

Cell Behavior · Quantitative Biology 2024-10-30 Michael Grinfeld , Nigel Mottram , Jozsef Farkas

The Lagrangian theory of structure formation in cosmological fluids, restricted to the matter model ``dust'', provides successful models of large-scale structure in the Universe in the laminar regime, i.e., where the fluid flow is…

Astrophysics · Physics 2011-05-23 Susanne Adler , Thomas Buchert

Multiple systems play an important role in the evolution of star clusters. First we discuss several formation mechanisms which depend on the presence of binaries, either primordial or of dynamical origin. Hierarchical configurations are…

Astrophysics · Physics 2007-05-23 Sverre J. Aarseth , Rosemary A. Mardling

We estimate density of defects frozen into a biological Turing pattern which was turned on at a finite rate. A self-locking of gene expression in individual cells, which makes the Turing transition discontinuous, stabilizes the pattern…

Biological Physics · Physics 2007-05-23 Jacek Dziarmaga

We consider a rational system of first order difference equations in the plane with four parameters such that all fractions have a common denominator. We study, for the different values of the parameters, the global and local properties of…

Dynamical Systems · Mathematics 2010-11-10 Ignacio Bajo , Daniel Franco , Juan Perán

The subject of this paper is the evolution of the concept of information processing in regular structures based on multi-level processing in nested cellular automata. The essence of the proposed model is a discrete space-time containing…

Neural and Evolutionary Computing · Computer Science 2022-10-13 Jerzy Szynka

Intracellular protein patterns are described by (nearly) mass-conserving reaction-diffusion systems. While these patterns initially form out of a homogeneous steady state due to the well-understood Turing instability, no general theory…

Pattern Formation and Solitons · Physics 2024-01-11 Henrik Weyer , Fridtjof Brauns , Erwin Frey

The dynamical behavior of two types of non-equilibrium systems is discussed: $(a)$ two-dimensional cellular structures, and $(b)$ living polymers. Simple models governing their evolution are introduced and steady state distributions (cell…

Condensed Matter · Physics 2007-05-23 David Mukamel

We show how kinetic theory, the statistics of classical particles obeying Newtonian dynamics, can be formulated as a field theory. The field theory can be organized to produce a self-consistent perturbation theory expansion in an effective…

Statistical Mechanics · Physics 2015-06-03 Shankar P. Das , Gene F. Mazenko

The dynamics of dislocations can be formulated in terms of the evolution of continuous variables representing dislocation densities ('continuum dislocation dynamics'). We show for various variants of this approach that the resulting models…

Materials Science · Physics 2024-10-23 Yufan Zhang , Ronghai Wu , Michael Zaiser

We study the Tangled Nature model of macro evolution and demonstrate that the co-evolutionary dynamics produces an increasingly correlated core of well occupied types. At the same time the entire configuration of types becomes increasing…

Statistical Mechanics · Physics 2015-03-13 Dominic Jones , Henrik Jeldtoft Jensen , Paolo Sibani

Bacteria can form a great variety of spatially heterogeneous cell density patterns, ranging from simple concentric rings to dynamical spiral waves appearing in growing colonies. These pattern formation phenomena are important as they…

Populations and Evolution · Quantitative Biology 2025-01-17 John S. Chuang , Riccardo Rao , Stanislas Leibler

One of the main properties of biological systems is modularity, which manifests itself at all levels of their organization, starting with the level of molecular genetics, ending with the level of whole organisms and their communities. In a…

Neural and Evolutionary Computing · Computer Science 2018-11-20 Anton Eremeev , Alexander Spirov

We examine an infinite, linear system of ordinary differential equations that models the evolution of fragmenting clusters, where each cluster is assumed to be composed of identical units. In contrast to previous investigations into such…

Functional Analysis · Mathematics 2024-06-17 Lyndsay Kerr , Wilson Lamb , Matthias Langer

We present here a system of self-propelled particles that follow a very simple motion law in continuous space in a deterministic and asynchronous way. This system of particles is capable of producing, depending on the particle density in…

Pattern Formation and Solitons · Physics 2015-12-17 Thomas Schmickl , Martin Stefanec

This article reviews and evaluates models of network evolution based on the notion of structural diversity. We show that diversity is an underlying theme of three principles of network evolution: the preferential attachment model,…

Social and Information Networks · Computer Science 2020-09-22 Jérôme Kunegis

Stress transmission in planar open-cell cellular solids is analysed using a recent theory developed for marginally rigid granular assemblies. This is made possible by constructing a one-to-one mapping between the two systems. General…

Materials Science · Physics 2009-11-07 Raphael Blumenfeld

A one dimensional lattice model is formulated to study tapping dynamics and the long time steady distribution in granular media. The dynamics conserves the number of particles in the system, and density changes are associated to the…

Statistical Mechanics · Physics 2007-05-23 J. J. Brey , A. Prados
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