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In this paper we propose a graph-based data clustering algorithm which is based on exact clustering of a minimum spanning tree in terms of a minimum isoperimetry criteria. We show that our basic clustering algorithm runs in $O(n \log n)$…

Computer Vision and Pattern Recognition · Computer Science 2012-03-20 Amir Daneshgar , Ramin Javadi , Basir Shariat Razavi

Single-level density-based approach has long been widely acknowledged to be a conceptually and mathematically convincing clustering method. In this paper, we propose an algorithm called "best-scored clustering forest" that can obtain the…

Machine Learning · Statistics 2019-06-25 Hanyuan Hang , Yuchao Cai , Hanfang Yang

Clustering is a technique for the analysis of datasets obtained by empirical studies in several disciplines with a major application for biomedical research. Essentially, clustering algorithms are executed by machines aiming at finding…

Quantitative Methods · Quantitative Biology 2024-09-30 Diego Ulisse Pizzagalli , Santiago Fernandez Gonzalez , Rolf Krause

We propose a new clustering technique that can be regarded as a numerical method to compute the proximity gestalt. The method analyzes edge length statistics in the MST of the dataset and provides an a contrario cluster detection criterion.…

Machine Learning · Computer Science 2011-07-20 Mariano Tepper , Pablo Musé , Andrés Almansa

A difficult problem in clustering is how to handle data with a manifold structure, i.e. data that is not shaped in the form of compact clouds of points, forming arbitrary shapes or paths embedded in a high-dimensional space. In this work we…

Computer Vision and Pattern Recognition · Computer Science 2010-06-15 Ariel E. Baya , Pablo M. Granitto

Cluster deletion is an NP-hard graph clustering objective with applications in computational biology and social network analysis, where the goal is to delete a minimum number of edges to partition a graph into cliques. We first provide a…

Data Structures and Algorithms · Computer Science 2024-04-26 Vicente Balmaseda , Ying Xu , Yixin Cao , Nate Veldt

The primary goal in cluster analysis is to discover natural groupings of objects. The field of cluster analysis is crowded with diverse methods that make special assumptions about data and address different scientific aims. Despite its…

Genomics · Quantitative Biology 2018-06-07 Gary K. Chen , Eric Chi , John Ranola , Kenneth Lange

SpectralNet is a graph clustering method that uses neural network to find an embedding that separates the data. So far it was only used with $k$-nn graphs, which are usually constructed using a distance metric (e.g., Euclidean distance).…

Machine Learning · Computer Science 2023-02-28 Mashaan Alshammari , John Stavrakakis , Adel F. Ahmed , Masahiro Takatsuka

Nearest neighbor (k-NN) graphs are widely used in machine learning and data mining applications, and our aim is to better understand what they reveal about the cluster structure of the unknown underlying distribution of points. Moreover, is…

Machine Learning · Statistics 2011-05-06 Samory Kpotufe , Ulrike von Luxburg

We introduce a dynamic version of the NP-hard graph problem Cluster Editing. The essential point here is to take into account dynamically evolving input graphs: Having a cluster graph (that is, a disjoint union of cliques) that represents a…

Discrete Mathematics · Computer Science 2018-12-12 Junjie Luo , Hendrik Molter , André Nichterlein , Rolf Niedermeier

Graph clustering (or community detection) has long drawn enormous attention from the research on web mining and information networks. Recent literature on this topic has reached a consensus that node contents and link structures should be…

Social and Information Networks · Computer Science 2017-12-25 Carl Yang , Mengxiong Liu , Zongyi Wang , Liyuan Liu , Jiawei Han

Previously, we proposed a physically-inspired method to construct data points into an effective in-tree (IT) structure, in which the underlying cluster structure in the dataset is well revealed. Although there are some edges in the IT…

Machine Learning · Statistics 2015-07-30 Teng Qiu , Yongjie Li

Graph-based clustering has shown promising performance in many tasks. A key step of graph-based approach is the similarity graph construction. In general, learning graph in kernel space can enhance clustering accuracy due to the…

Machine Learning · Computer Science 2019-05-22 Zhao Kang , Honghui Xu , Boyu Wang , Hongyuan Zhu , Zenglin Xu

We study the problem of clustering nodes in a dynamic graph, where the connections between nodes and nodes' cluster memberships may change over time, e.g., due to community migration. We first propose a dynamic stochastic block model that…

Machine Learning · Computer Science 2021-06-24 Yuhang Yao , Carlee Joe-Wong

An uncertain graph $\mathcal{G} = (V, E, p : E \rightarrow (0,1])$ can be viewed as a probability space whose outcomes (referred to as \emph{possible worlds}) are subgraphs of $\mathcal{G}$ where any edge $e\in E$ occurs with probability…

Data Structures and Algorithms · Computer Science 2017-10-17 Matteo Ceccarello , Carlo Fantozzi , Andrea Pietracaprina , Geppino Pucci , Fabio Vandin

Algorithms for node clustering typically focus on finding homophilous structure in graphs. That is, they find sets of similar nodes with many edges within, rather than across, the clusters. However, graphs often also exhibit heterophilous…

Machine Learning · Computer Science 2023-08-15 Sudhanshu Chanpuriya , Cameron Musco

We propose a new method for clustering based on the local minimization of the \gamma-divergence, which we call the spontaneous clustering. The greatest advantage of the proposed method is that it automatically detects the number of clusters…

Methodology · Statistics 2013-05-01 Akifumi Notsu , Osamu Komori , Shinto Eguchi

This paper presents a neural network-based end-to-end clustering framework. We design a novel strategy to utilize the contrastive criteria for pushing data-forming clusters directly from raw data, in addition to learning a feature embedding…

Machine Learning · Computer Science 2016-04-27 Yen-Chang Hsu , Zsolt Kira

Finding a good clustering of vertices in a network, where vertices in the same cluster are more tightly connected than those in different clusters, is a useful, important, and well-studied task. Many clustering algorithms scale well,…

Social and Information Networks · Computer Science 2011-10-18 Thomas DuBois , Jennifer Golbeck , Aravind Srinivasan

Networks (or graphs) appear as dominant structures in diverse domains, including sociology, biology, neuroscience and computer science. In most of the aforementioned cases graphs are directed - in the sense that there is directionality on…

Social and Information Networks · Computer Science 2015-06-16 Fragkiskos D. Malliaros , Michalis Vazirgiannis