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Previous work has shown that feature maps of deep convolutional neural networks (CNNs) can be interpreted as feature representation of a particular image region. Features aggregated from these feature maps have been exploited for image…

Computer Vision and Pattern Recognition · Computer Science 2016-11-08 Jiedong Hao , Jing Dong , Wei Wang , Tieniu Tan

Reconstructing weighted networks from partial information is necessary in many important circumstances, e.g. for a correct estimation of systemic risk. It has been shown that, in order to achieve an accurate reconstruction, it is crucial to…

Physics and Society · Physics 2017-03-07 Tiziano Squartini , Giulio Cimini , Andrea Gabrielli , Diego Garlaschelli

In this paper we propose an ensemble of local and deep features for object classification. We also compare and contrast effectiveness of feature representation capability of various layers of convolutional neural network. We demonstrate…

Computer Vision and Pattern Recognition · Computer Science 2017-12-14 Siddharth Srivastava , Prerana Mukherjee , Brejesh Lall , Kamlesh Jaiswal

Retrieving gene functional networks from knowledge databases presents a challenge due to the mismatch between disease networks and subtype-specific variations. Current solutions, including statistical and deep learning methods, often fail…

Machine Learning · Computer Science 2025-02-25 Ziwei Yang , Zheng Chen , Xin Liu , Rikuto Kotoge , Peng Chen , Yasuko Matsubara , Yasushi Sakurai , Jimeng Sun

The analysis of DNA sequences has become critical in numerous fields, from evolutionary biology to understanding gene regulation and disease mechanisms. While deep neural networks can achieve remarkable predictive performance, they…

Machine Learning · Computer Science 2026-04-15 Nicolas Huynh , Krzysztof Kacprzyk , Ryan Sheridan , David Bentley , Mihaela van der Schaar

Complex network systems' models are designed to perfectly emulate real-world networks through the use of simulation and link prediction. Complex network systems are defined by nodes and their connections where both have real-world features…

Artificial Intelligence · Computer Science 2024-12-03 Katarzyna Musial , Jiaqi Wen , Andreas Gwyther-Gouriotis

Scanpath classification is an area in eye tracking research with possible applications in medicine, manufacturing as well as training systems for students in various domains. In this paper we propose a trainable feature extraction module…

Computer Vision and Pattern Recognition · Computer Science 2024-03-20 Wolfgang Fuhl

This work describes how the formalization of complex network concepts in terms of discrete mathematics, especially mathematical morphology, allows a series of generalizations and important results ranging from new measurements of the…

Statistical Mechanics · Physics 2007-09-19 Luciano da Fontoura Costa , Luis Enrique C. da Rocha

Inspired by biology's most sophisticated computer, the brain, neural networks constitute a profound reformulation of computational principles. Remarkably, analogous high-dimensional, highly-interconnected computational architectures also…

Disordered Systems and Neural Networks · Physics 2024-01-23 Constantine Glen Evans , Jackson O'Brien , Erik Winfree , Arvind Murugan

This paper describes a geometry based technique for feature extraction applicable to segmentation-based word recognition systems. The proposed system extracts the geometric features of the character contour. This features are based on the…

Computer Vision and Pattern Recognition · Computer Science 2015-03-13 Dinesh Dileep Gaurav , Renu Ramesh

This manuscript delves into the intersection of genomics and phenotypic prediction, focusing on the statistical innovation required to navigate the complexities introduced by noisy covariates and confounders. The primary emphasis is on the…

Methodology · Statistics 2024-11-15 Upama Paul Chowdhury , Ronit Bhattacharjee , Susmita Das , Abhik Ghosh

Link prediction is an important task in social network analysis. There are different characteristics (features) in a social network that can be used for link prediction. In this paper, we evaluate the effectiveness of aggregated features…

Social and Information Networks · Computer Science 2020-07-01 Mohammad G. Raeini

Deep neural networks are representation learning techniques. During training, a deep net is capable of generating a descriptive language of unprecedented size and detail in machine learning. Extracting the descriptive language coded within…

Neural and Evolutionary Computing · Computer Science 2018-01-30 Dario Garcia-Gasulla , Ferran Parés , Armand Vilalta , Jonatan Moreno , Eduard Ayguadé , Jesús Labarta , Ulises Cortés , Toyotaro Suzumura

Connectomics is an emerging field in neuroscience that aims to reconstruct the 3-dimensional morphology of neurons from electron microscopy (EM) images. Recent studies have successfully demonstrated the use of convolutional neural networks…

Computer Vision and Pattern Recognition · Computer Science 2017-02-27 Shibani Santurkar , David Budden , Alexander Matveev , Heather Berlin , Hayk Saribekyan , Yaron Meirovitch , Nir Shavit

If the training dataset is not very large, image recognition is usually implemented with the transfer learning methods. In these methods the features are extracted using a deep convolutional neural network, which was preliminarily trained…

Computer Vision and Pattern Recognition · Computer Science 2017-08-10 Andrey Savchenko

In this work we explore the possibility of applying machine learning methods designed for one-dimensional problems to the task of galaxy image classification. The algorithms used for image classification typically rely on multiple costly…

Astrophysics of Galaxies · Physics 2022-02-23 F. Tarsitano , C. Bruderer , K. Schawinski , W. G. Hartley

Interpretable machine learning has emerged as central in leveraging artificial intelligence within high-stakes domains such as healthcare, where understanding the rationale behind model predictions is as critical as achieving high…

Machine Learning · Computer Science 2024-04-30 Christel Sirocchi , Martin Urschler , Bastian Pfeifer

Graph-based machine learning methods are useful tools in the identification and prediction of variation in genetic data. In particular, the comprehension of phenotypic effects at the cellular level is an accelerating research area in…

Quantitative Methods · Quantitative Biology 2024-12-06 Nandini Gadhia , Michalis Smyrnakis , Po-Yu Liu , Damer Blake , Melanie Hay , Anh Nguyen , Dominic Richards , Dong Xia , Ritesh Krishna

The Semantic Web aims at representing knowledge about the real world at web scale - things, their attributes and relationships among them can be represented as nodes and edges in an inter-linked semantic graph. In the presence of noisy…

Artificial Intelligence · Computer Science 2018-02-08 Rahul Parundekar

Tandem mass spectrometry (MS/MS) is a high-throughput technology used toidentify the proteins in a complex biological sample, such as a drop of blood. A collection of spectra is generated at the output of the process, each spectrum of which…

Quantitative Methods · Quantitative Biology 2019-09-06 John T. Halloran , David M. Rocke