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Relatively short peptides, such as toxins and antimicrobial-peptides, are known to insert themselves into cell membranes. On the basis of simple bead-spring models for the membrane lipids, the peptide, and water, detailed processes of the…

Soft Condensed Matter · Physics 2007-05-23 Mitsuharu Okazaki , Tomoki Watanabe , Naohito Urakami , Takashi Yamamoto

The biological function of membranes is closely related to their softness, which is often studied through the membranes' thermally-driven fluctuations. The analysis commonly assumes that the relaxation rate of a pure bending deformation is…

Soft Condensed Matter · Physics 2024-07-09 Hammad A. Faizi , Rony Granek , Petia M. Vlahovska

The recent experimental characterization of B80- via photoelectron spectroscopy stimulated renewed interest in exploring B80 clusters. Here, a D3h-symmetric B80 bilayer structure has been proposed using density functional theory…

Atomic and Molecular Clusters · Physics 2025-11-18 Yi-Sha Chen , Jing-Jing Guo , Peng-Bo Liu , Hui-Yan Zhao , Jing Wang , Ying Liu

Bending rigidity, k, is classically measured for lipid membranes to characterize their nanoscale mechanical properties as a function of composition. Widely employed as a comparative tool, it helps understanding the relationship between the…

Soft Condensed Matter · Physics 2023-10-24 Niki Baccile , Ingo Hoffmann , Vincent Chaleix

A set of sp2 amorphous carbons involving natural mineral shungite carbon and antraxolite as well as two synthetic carbon blacks were investigated by using neutron powder diffraction and inelastic neutron scattering at low temperature. NDP…

The cell membrane is inherently asymmetric and heterogeneous in its composition, a feature that is crucial for its function. Using atomistic molecular dynamics simulations, the physical properties of a 3-component asymmetric mixed lipid…

Soft Condensed Matter · Physics 2012-04-04 Anirban Polley , Satyavani Vemparala , Madan Rao

We investigate a model of an asymmetric bilayer consisting of sphigomyelin, phosphatidylcholine, and cholesterol in the outer leaflet, and phosphatidyl\-ethanolamine, (PE), phosphatidylserine, and cholesterol in the inner leaflet.…

Soft Condensed Matter · Physics 2016-08-23 H. Giang , M. Schick

A mirrored bilayer structure incorporating layers of Graphene and MoS2 is proposed here for Surface Plasmon Resonance (SPR) biosensing and its performance is evaluated numerically. Starting from the basic configuration, the structure with…

Optics · Physics 2020-02-10 Sayeed Shafayet Chowdhury , Syed Mohammad Ashab Uddin

We introduce a simple model for DNA-cationic-lipid complexes in which galleries between planar bilayer lipid lamellae contain DNA 2D smectic lattices that couple orientationally and positionally to lattices in neighboring galleries. We…

Soft Condensed Matter · Physics 2009-10-30 C. S. O'Hern , T. C. Lubensky

Structural, magnetic, and superconducting properties of S/F bilayers Nb/Cu40Ni60 deposited on silicon substrate have been characterized using Polarized Neutron Reflectometry and complementary techniques. The study allowed to determine real…

Strongly Correlated Electrons · Physics 2015-08-13 Yu. Khaydukov , R. Morari , L. Mustafa , J. -H. Kim , T. Keller , S. Belevski , A. Csik , L. Tagirov , G. Logvenov , A. Sidorenko , B. Keimer

DNA oligomers with properly designed sequences self-assemble into well defined constructs. Here, we exploit this methodology to produce bulk quantities of tetravalent DNA nanostars (each one composed by 196 nucleotides) and to explore the…

The study of interactions between biomimetic membranes and micron-sized particles is crucial for understanding various biological processes. Here, we control microparticle spontaneous engulfment by giant lipid vesicles by tuning particle…

Soft Condensed Matter · Physics 2025-01-22 Clément Marque , Gaetano D'Avino , Domenico Larobina , Aude Michel , Ali Abou-Hassan , Antonio Stocco

We report a new and facile method for measuring edge tensions of lipid membranes. The approach is based on electroporation of giant unilamellar vesicles and analysis of the pore closure dynamics. We applied this method to evaluate the edge…

Biological Physics · Physics 2011-02-11 Thomas Portet , Rumiana Dimova

We implement the replica exchange molecular dynamics algorithm to study the interactions of a model peptide (WALP-16) with an explicitly represented DPPC membrane bilayer. We observe the spontaneous, unbiased insertion of WALP-16 into the…

Biomolecules · Quantitative Biology 2007-05-23 Hugh Nymeyer , Thomas B. Woolf , Angel E. Garcia

The structure of the transient layer at the interface between air and the aqueous solution of silica nanoparticles with the size distribution of particles that has been determined from small-angle scattering has been studied by the X-ray…

We present a simple coarse-grained bead-and-spring model for lipid bilayers. The system has been developed to reproduce the main (gel-liquid) transition of biological membranes on intermediate length scales of a couple of nanometres and is…

Soft Condensed Matter · Physics 2007-05-23 Olaf Lenz , Friederike Schmid

Understanding how lipid bilayers respond to pressure is essential for interpreting the coupling between membrane proteins and their native environments. Here, we use all-atom molecular dynamics to examine the pressure-temperature behavior…

Soft Condensed Matter · Physics 2026-01-12 Yanna Gautier , Guillaume Stirnemann , Jérôme Hénin

The discovery of superconductivity with onset temperature of ~80 K in pressurized bilayer Ruddlesden-Popper La3Ni2O7-d has attracted much attention. Despite intense research, determination of the exact oxygen content and understanding of…

Lipid-based drug delivery systems are considered as promising vehicles for hydrophobic drug compounds. Lipid distribution within the droplet can affect drug loading capacity in these carriers. It is extremely challenging to determine the…

Computational Physics · Physics 2019-06-12 Maryam Khalkhali , Sarah Mohammadinejad , Farhad Khoeini , Kobra Rostamizadeh

The submicron- and micron-scale structures of composite hydrogels based on bacterial cellulose (BC) and polyacrylamide were studied by spin-echo small-angle neutron scattering (SESANS). These hydrogels were synthesized via free-radical…

Chemical Physics · Physics 2016-08-02 E. V. Velichko , A. L. Buyanov , Yu. O. Chetverikov , C. P. Duif , W. G. Bouwman , R. Yu. Smyslov
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