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In this work, we extend the SEEDS superpixel algorithm from 2D images to 3D volumes, resulting in 3D SEEDS, a faster, better, and open-source supervoxel algorithm for medical image analysis. We compare 3D SEEDS with the widely used…

Computer Vision and Pattern Recognition · Computer Science 2025-02-05 Chenhui Zhao , Yan Jiang , Todd C. Hollon

Identification of regions of interest (ROI) associated with certain disease has a great impact on public health. Imposing sparsity of pixel values and extracting active regions simultaneously greatly complicate the image analysis. We…

Machine Learning · Statistics 2016-05-30 Yao Chen , Xiao Wang , Linglong Kong , Hongtu Zhu

It is well-known in image processing that computational cost increases rapidly with the number and dimensions of the images to be processed. Several fields, such as medical imaging, routinely use numerous very large images, which might also…

Computer Vision and Pattern Recognition · Computer Science 2016-05-24 Fares Al-Qunaieer , Hamid R. Tizhoosh , Shahryar Rahnamayan

This article suggests an algorithm of formation a training set for artificial neural network in case of image segmentation. The distinctive feature of this algorithm is that it using only one image for segmentation. The segmentation…

Computer Vision and Pattern Recognition · Computer Science 2018-12-27 S. V. Belim , S. B. Larionov

The quantitative analysis of 3D confocal microscopy images of the shoot apical meristem helps understanding the growth process of some plants. Cell segmentation in these images is crucial for computational plant analysis and many automated…

Computer Vision and Pattern Recognition · Computer Science 2017-10-30 Thiago V. Spina , Johannes Stegmaier , Alexandre X. Falcão , Elliot Meyerowitz , Alexandre Cunha

Image segmentation is often performed on medical images for identifying diseases in clinical evaluation. Hence it has become one of the major research areas. Conventional image segmentation techniques are unable to provide satisfactory…

Computer Vision and Pattern Recognition · Computer Science 2017-02-13 Pratik Kalshetti , Manas Bundele , Parag Rahangdale , Dinesh Jangra , Chiranjoy Chattopadhyay , Gaurav Harit , Abhay Elhence

This article presents a novel 3D planar patch extraction method using a probabilistic region growing algorithm. Our method works by simultaneously initiating multiple planar patches from seed points, the latter determined by an…

Computer Vision and Pattern Recognition · Computer Science 2014-06-30 Vasileios Zografos

Automatic segmentation of anatomical structures is critical in medical image analysis, aiding diagnostics and treatment planning. Skin segmentation plays a key role in registering and visualising multimodal imaging data. 3D skin…

Image and Video Processing · Electrical Eng. & Systems 2025-06-16 Martina Paccini , Giuseppe Patanè

Object segmentation plays an important role in the modern medical image analysis, which benefits clinical study, disease diagnosis, and surgery planning. Given the various modalities of medical images, the automated or semi-automated…

Image and Video Processing · Electrical Eng. & Systems 2020-06-01 Dong Yang , Holger Roth , Xiaosong Wang , Ziyue Xu , Andriy Myronenko , Daguang Xu

Studying the growth and metabolism of microbes provides critical insights into their evolutionary adaptations to harsh environments, which are essential for microbial research and biotechnology applications. In this study, we developed an…

Image and Video Processing · Electrical Eng. & Systems 2025-05-06 Shuang Zhang , Carleton Coffin , Karyn L. Rogers , Catherine Ann Royer , Ge Wang

Modeling the 3D structures of cells and tissues is crucial in biology. Sequential cross-sectional images from electron microscopy provide high-resolution intracellular structure information. The segmentation of complex cell structures…

Quantitative Methods · Quantitative Biology 2025-02-14 Jin Kousaka , Atsuko H. Iwane , Yuichi Togashi

Medical image analysis practitioners have embraced big data methodologies. This has created a need for large annotated datasets. The source of big data is typically large image collections and clinical reports recorded for these images. In…

Computer Vision and Pattern Recognition · Computer Science 2018-09-09 Mehdi Moradi , Ali Madani , Yaniv Gur , Yufan Guo , Tanveer Syeda-Mahmood

This paper presents a new probabilistic generative model for image segmentation, i.e. the task of partitioning an image into homogeneous regions. Our model is grounded on a mid-level image representation, called a region tree, in which…

Machine Learning · Statistics 2015-06-15 Shell X. Hu , Christopher K. I. Williams , Sinisa Todorovic

Multispectral images acquired by satellites are used to study phenomena on the Earth's surface. Unsupervised classification techniques analyze multispectral image content without considering prior knowledge of the observed terrain; this is…

Computer Vision and Pattern Recognition · Computer Science 2019-11-12 Wuilian Torres , Antonio Rueda-Toicen

Interactive image segmentation algorithms rely on the user to provide annotations as the guidance. When the task of interactive segmentation is performed on a small touchscreen device, the requirement of providing precise annotations could…

Computer Vision and Pattern Recognition · Computer Science 2018-12-19 Ding-Jie Chen , Hwann-Tzong Chen , Long-Wen Chang

Automatic image segmentation becomes very crucial for tumor detection in medical image processing.In general, manual and semi automatic segmentation techniques require more time and knowledge. However these drawbacks had overcome by…

Computer Vision and Pattern Recognition · Computer Science 2016-03-09 D. Anithadevi , K. Perumal

Morphological reconstruction (MR) is often employed by seeded image segmentation algorithms such as watershed transform and power watershed as it is able to filter seeds (regional minima) to reduce over-segmentation. However, MR might…

Computer Vision and Pattern Recognition · Computer Science 2019-10-02 Tao Lei , Xiaohong Jia , Tongliang Liu , Shigang Liu , Hongying Meng , Asoke K. Nandi

Thoracic aortic dissection and aneurysms are the most lethal diseases of the aorta. The major hindrance to treatment lies in the accurate analysis of the medical images. More particularly, aortic segmentation of the 3D image is often…

Image and Video Processing · Electrical Eng. & Systems 2026-01-14 Loris Giordano , Ine Dirks , Tom Lenaerts , Jef Vandemeulebroucke

Despite the recent success of deep learning methods at achieving new state-of-the-art accuracy for medical image segmentation, some major limitations are still restricting their deployment into clinics. One major limitation of deep…

Image and Video Processing · Electrical Eng. & Systems 2023-05-30 Lucas Fidon

Medical segmentation is performed to determine the bounds of regions of interest (ROI) prior to surgery. By allowing the study of growth, structure, and behaviour of the ROI in the planning phase, critical information can be obtained,…

Image and Video Processing · Electrical Eng. & Systems 2020-10-06 Bao Nguyen , Adam Feldman , Sarath Bethapudi , Andrew Jennings , Chris G. Willcocks