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The R package merlin performs flexible joint modelling of hierarchical multi-outcome data. Increasingly, multiple longitudinal biomarker measurements, possibly censored time-to-event outcomes and baseline characteristics are available.…

Computation · Statistics 2020-07-29 Emma C. Martin , Alessandro Gasparini , Michael J. Crowther

Cross-fitting is a key ingredient in many semiparametric estimation procedures, such as double/debiased machine learning (DML), enabling valid estimation of low-dimensional targets in the presence of high-dimensional nuisance functions by…

Computation · Statistics 2026-05-18 Etienne Peyrot , François Petit

We look at common problems found in data that is used for predictive modeling tasks, and describe how to address them with the vtreat R package. vtreat prepares real-world data for predictive modeling in a reproducible and statistically…

Applications · Statistics 2019-09-24 Nina Zumel , John Mount

Nonstationarity in spatial and spatio-temporal processes is ubiquitous in environmental datasets, but is not often addressed in practice, due to a scarcity of statistical software packages that implement nonstationary models. In this…

Computation · Statistics 2025-12-10 Quan Vu , Xuanjie Shao , Raphaël Huser , Andrew Zammit-Mangion

Currently, the success of large language models (LLMs) illustrates that a unified multitasking approach can significantly enhance model usability, streamline deployment, and foster synergistic benefits across different tasks. However, in…

Computer Vision and Pattern Recognition · Computer Science 2025-10-03 Bin Xia , Yuechen Zhang , Jingyao Li , Chengyao Wang , Yitong Wang , Xinglong Wu , Bei Yu , Jiaya Jia

The fitting or parameter estimation of complex ecological models is a challenging optimisation task, with a notable lack of tools for fitting complex, long runtime or stochastic models. calibrar is an R package that is dedicated to the…

Quantitative Methods · Quantitative Biology 2024-04-30 Ricardo Oliveros-Ramos , Yunne-Jai Shin

A number of novel programming languages and libraries have been proposed that offer simpler-to-use models of concurrency than threads. It is challenging, however, to devise execution models that successfully realise their abstractions…

Software Engineering · Computer Science 2016-03-24 Claudio Corrodi , Alexander Heußner , Christopher M. Poskitt

The package High-dimensional Metrics (\Rpackage{hdm}) is an evolving collection of statistical methods for estimation and quantification of uncertainty in high-dimensional approximately sparse models. It focuses on providing confidence…

Machine Learning · Statistics 2017-09-28 Victor Chernozhukov , Chris Hansen , Martin Spindler

The paper provides a unified co-design of 1) a programming and execution model that allows spawning tasks from within the vertex data at runtime, 2) language constructs for \textit{actions} that send work to where the data resides,…

Distributed, Parallel, and Cluster Computing · Computer Science 2024-05-09 Bibrak Qamar Chandio , Prateek Srivastava , Maciej Brodowicz , Martin Swany , Thomas Sterling

Rotoscoping, the detailed delineation of scene elements through a video shot, is a painstaking task of tremendous importance in professional post-production pipelines. While pixel-wise segmentation techniques can help for this task,…

Computer Vision and Pattern Recognition · Computer Science 2016-12-06 Ondrej Miksik , Juan-Manuel Pérez-Rúa , Philip H. S. Torr , Patrick Pérez

In the world of Big Data analytics, there is a series of tools aiming at simplifying programming applications to be executed on clusters. Although each tool claims to provide better programming, data and execution models, for which only…

Distributed, Parallel, and Cluster Computing · Computer Science 2016-06-17 Claudia Misale , Maurizio Drocco , Marco Aldinucci , Guy Tremblay

This paper introduces the RUMBoost model, a novel discrete choice modelling approach that combines the interpretability and behavioural robustness of Random Utility Models (RUMs) with the generalisation and predictive ability of deep…

Machine Learning · Computer Science 2024-11-19 Nicolas Salvadé , Tim Hillel

The cgam package contains routines to fit the generalized additive model where the components may be modeled with shape and smoothness assumptions. The main routine is cgam and nineteen symbolic routines are provided to indicate the…

Applications · Statistics 2018-12-20 Xiyue Liao , Mary C. Meyer

Data depth is a well-known and useful nonparametric tool for analyzing functional data. It provides a novel way of ranking a sample of curves from the center outwards and defining robust statistics, such as the median or trimmed means. It…

Methodology · Statistics 2020-07-31 Carlo Sguera , Sara López-Pintado

Ranking data represent a peculiar form of multivariate ordinal data taking values in the set of permutations. Despite the numerous methodological contributions to increase the flexibility of ranked data modeling, the application of more…

Computation · Statistics 2018-03-13 Cristina Mollica , Luca Tardella

The synthpop package for R https://www.synthpop.org.uk provides tools to allow data custodians to create synthetic versions of confidential microdata that can be distributed with fewer restrictions than the original. The synthesis can be…

Computation · Statistics 2021-11-16 Gillian M Raab , Beata Nowok , Chris Dibben

Tree-based models are often robust to uninformative features and can accurately capture non-smooth, complex decision boundaries. Consequently, they often outperform neural network-based models on tabular datasets at a significantly lower…

Machine Learning · Computer Science 2025-05-08 Urška Matjašec , Nikola Simidjievski , Mateja Jamnik

We present the R package SimInf which provides an efficient and very flexible framework to conduct data-driven epidemiological modeling in realistic large scale disease spread simulations. The framework integrates infection dynamics in…

Populations and Evolution · Quantitative Biology 2021-08-10 Stefan Widgren , Pavol Bauer , Robin Eriksson , Stefan Engblom

Discovering patterns of the complex high-dimensional data is a long-standing problem. Dimension Reduction (DR) and Intrinsic Dimension Estimation (IDE) are two fundamental thematic programs that facilitate geometric understanding of the…

Machine Learning · Statistics 2022-09-13 Kisung You

It is shown how to set up, conduct, and analyze large simulation studies with the new R package simsalapar = simulations simplified and launched parallel. A simulation study typically starts with determining a collection of input variables…

Computation · Statistics 2013-09-18 Marius Hofert , Martin Mächler