Related papers: Computing Covers Using Prefix Tables
The longest common prefix array is a very advantageous data structure that, combined with the suffix array and the Burrows-Wheeler transform, allows to efficiently compute some combinatorial properties of a string useful in several…
We consider approximation algorithms for covering integer programs of the form min $\langle c, x \rangle $ over $x \in \mathbb{N}^n $ subject to $A x \geq b $ and $x \leq d$; where $A \in \mathbb{R}_{\geq 0}^{m \times n}$, $b \in…
Given string $S[1..N]$ and integer $k$, the {\em suffix selection} problem is to determine the $k$th lexicographically smallest amongst the suffixes $S[i... N]$, $1 \leq i \leq N$. We study the suffix selection problem in the cache-aware…
Let $G=(V,E)$ be a simple connected graph. A connected edge cover of $G$ is a subset $S\subseteq E$ such that every vertex of $G$ is incident with at least one edge in $S$ and the subgraph induced by $S$ is connected. The connected edge…
The normal covering number $\gamma(G)$ of a finite group $G$ is the minimum number of proper subgroups whose conjugates cover the group. We give various estimates for $\gamma(S_n)$ and $\gamma(A_n)$ depending on the arithmetic structure of…
A string is closed if it has length 1 or has a nonempty border without internal occurrences. In this paper we introduce the definition of a \emph{maximal closed substring} (MCS), which is an occurrence of a closed substring that cannot be…
We consider the problem of encoding a string of length $n$ from an integer alphabet of size $\sigma$ so that access and substring equality queries (that is, determining the equality of any two substrings) can be answered efficiently. Any…
Let $\gamma$ be a filling curve on a topological surface $\Sigma$ of genus $g \geq 2$. The inf invariant of $\gamma$, denoted $m_{\gamma}$, is the infimum of the length function on the space of marked hyperbolic structures on $\Sigma$. This…
The notion of graph covers (also referred to as locally bijective homomorphisms) plays an important role in topological graph theory and has found its computer science applications in models of local computation. For a fixed target graph…
We give a procedure that can be used to automatically satisfy invariants of a certain shape. These invariants may be written with the operations intersection, composition and converse over binary relations, and equality over these…
This work considers a number of optimization problems and reductive relations between them. The two main problems we are interested in are the \emph{Optimal Decision Tree} and \emph{Set Cover}. We study these two fundamental tasks under…
A method for encoding and decoding spectrum shaped binary run-length constrained sequences is described. The binary sequences with predefined range of exponential sums are introduced. On the base of Cover's enumerative scheme, recurrence…
Repeat finding in strings has important applications in subfields such as computational biology. The challenge of finding the longest repeats covering particular string positions was recently proposed and solved by \.{I}leri et al., using a…
A clique covering of a graph $G$ is a set of cliques of $G$ such that any edge of $G$ is contained in one of these cliques, and the weight of a clique covering is the sum of the sizes of the cliques in it. The sigma clique cover number…
Given a set of strings, the shortest common superstring problem is to find the shortest possible string that contains all the input strings. The problem is NP-hard, but a lot of work has gone into designing approximation algorithms for…
We describe a RAM algorithm computing all runs (maximal repetitions) of a given string of length $n$ over a general ordered alphabet in $O(n\log^{\frac{2}3} n)$ time and linear space. Our algorithm outperforms all known solutions working in…
Like [1], we present an algorithm to compute the simulation of a query pattern in a graph of labeled nodes and unlabeled edges. However, our algorithm works on a compressed graph grammar, instead of on the original graph. The speed-up of…
We study the problems of finding a shortest synchronizing word and its length for a given prefix code. This is done in two different settings: when the code is defined by an arbitrary decoder recognizing its star and when the code is…
It has been conjectured that whenever an optimal covering array exists there is also a uniform covering array with the same parameters and this is true for all known optimal covering arrays. When used as a test suite, the application…
For a hypergraph $\mathcal{H}=(X,\mathcal{E})$ a \emph{support} is a graph $G$ on $X$ such that for each $E\in\mathcal{E}$, the induced subgraph of $G$ on the elements in $E$ is connected. If $G$ is planar, we call it a planar support. A…