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In this paper, we focus on the unsupervised setting for structure learning of deep neural networks and propose to adopt the efficient coding principle, rooted in information theory and developed in computational neuroscience, to guide the…

Machine Learning · Computer Science 2021-05-31 Jinhui Yuan , Fei Pan , Chunting Zhou , Tao Qin , Tie-Yan Liu

Learning the dependence structure among variables in complex systems is a central problem across medical, natural, and social sciences. These structures can be naturally represented by graphs, and the task of inferring such graphs from data…

Methodology · Statistics 2026-04-02 Lucas Kook , Søren Wengel Mogensen

In a graph convolutional network, we assume that the graph $G$ is generated wrt some observation noise. During learning, we make small random perturbations $\Delta{}G$ of the graph and try to improve generalization. Based on quantum…

Machine Learning · Computer Science 2019-07-02 Ke Sun , Piotr Koniusz , Zhen Wang

The problem of learning the structure of a high dimensional graphical model from data has received considerable attention in recent years. In many applications such as sensor networks and proteomics it is often expensive to obtain samples…

Machine Learning · Statistics 2016-04-08 Gautam Dasarathy , Aarti Singh , Maria-Florina Balcan , Jong Hyuk Park

The goal of graph inference is to design algorithms for learning properties of a hidden graph using queries to an oracle that returns information about the graph. Graph reconstruction, verification, and property testing are all types of…

Data Structures and Algorithms · Computer Science 2025-02-26 Huck Bennett , Mitchell Black , Amir Nayyeri , Evelyn Warton

Effective information analysis generally boils down to properly identifying the structure or geometry of the data, which is often represented by a graph. In some applications, this structure may be partly determined by design constraints or…

Machine Learning · Computer Science 2016-11-07 Dorina Thanou , Xiaowen Dong , Daniel Kressner , Pascal Frossard

We study structure learning for linear Gaussian SEMs in the presence of latent confounding. Existing continuous methods excel when errors are independent, while deconfounding-first pipelines rely on pervasive factor structure or…

Machine Learning · Computer Science 2025-10-03 Samhita Pal , James O'quinn , Kaveh Aryan , Heather Pua , James P. Long , Amir Asiaee

With the rapid growth of graph-structured data in critical domains, unsupervised graph-level anomaly detection (UGAD) has become a pivotal task. UGAD seeks to identify entire graphs that deviate from normal behavioral patterns. However,…

Machine Learning · Computer Science 2025-11-07 Qingfeng Chen , Haojin Zeng , Jingyi Jie , Shichao Zhang , Debo Cheng

Recently, graph neural networks (GNNs) have been widely used for document classification. However, most existing methods are based on static word co-occurrence graphs without sentence-level information, which poses three challenges:(1) word…

Computation and Language · Computer Science 2022-03-22 Yinhua Piao , Sangseon Lee , Dohoon Lee , Sun Kim

A class of random graphs is introduced and studied. The graphs are constructed in an algorithmic way from five motifs which were found in [Milo R., Shen-Orr S., Itzkovitz S., Kashtan N., Chklovskii D., Alon U., Science, 2002, 298, 824-827].…

Mathematical Physics · Physics 2011-06-23 M. Kotorowicz , Yu. Kozitsky

We propose a novel tree-like curvilinear structure reconstruction algorithm based on supervised learning and graph theory. In this work we analyze image patches to obtain the local major orientations and the rankings that correspond to the…

Computer Vision and Pattern Recognition · Computer Science 2016-12-09 Seong-Gyun Jeong , Yuliya Tarabalka , Nicolas Nisse , Josiane Zerubia

We consider the problem of estimating the underlying graph associated with a Markov random field, with the added twist that the decoding algorithm can iteratively choose which subsets of nodes to sample based on the previous samples,…

Information Theory · Computer Science 2017-02-08 Jonathan Scarlett , Volkan Cevher

Inferring temporal interaction graphs and higher-order structure from neural signals is a key problem in building generative models for systems neuroscience. Foundation models for large-scale neural data represent shared latent structures…

Machine Learning · Computer Science 2025-08-26 Nathan X. Kodama , Kenneth A. Loparo

Inferring properties of graph-structured data, e.g., the solubility of molecules, essentially involves learning the implicit mapping from graphs to their properties. This learning process is often costly for graph property learners like…

Machine Learning · Computer Science 2025-05-22 Chen Zhang , Weixin Bu , Zeyi Ren , Zhengwu Liu , Yik-Chung Wu , Ngai Wong

We study the problem of learning an unknown graph via group queries on node subsets, where each query reports whether at least one edge is present among the queried nodes. In general, learning arbitrary graphs with $n$ nodes and $k$ edges…

Information Theory · Computer Science 2025-11-25 Hoang Ta , Jonathan Scarlett

We consider the problem of learning a tree-structured Ising model from data, such that subsequent predictions computed using the model are accurate. Concretely, we aim to learn a model such that posteriors $P(X_i|X_S)$ for small sets of…

Machine Learning · Computer Science 2021-11-25 Enric Boix-Adsera , Guy Bresler , Frederic Koehler

Distributional learning provides a framework for studying the learnability of structured languages from positive data. In this paper, we extend this framework to graph languages generated by fixed-interface clause systems. We formulate…

Formal Languages and Automata Theory · Computer Science 2026-04-30 Takayoshi Shoudai , Satoshi Matsumoto , Yusuke Suzuki , Tomoyuki Uchida

In the recent research of data mining, frequent structures in a sequence of graphs have been studied intensively, and one of the main concern is changing structures along a sequence of graphs that can capture dynamic properties of data. On…

Data Structures and Algorithms · Computer Science 2012-06-28 Takeaki Uno , Yushi Uno

Graphical models are useful tools for describing structured high-dimensional probability distributions. Development of efficient algorithms for learning graphical models with least amount of data remains an active research topic.…

Machine Learning · Computer Science 2021-11-18 Marc Vuffray , Sidhant Misra , Andrey Y. Lokhov

In this paper, we propose an end-to-end graph learning framework, namely Iterative Deep Graph Learning (IDGL), for jointly and iteratively learning graph structure and graph embedding. The key rationale of IDGL is to learn a better graph…

Machine Learning · Computer Science 2020-10-26 Yu Chen , Lingfei Wu , Mohammed J. Zaki