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Modern high-end systems are increasingly becoming heterogeneous, providing users options to use general purpose Graphics Processing Units (GPU) and other accelerators for additional performance. High Performance Computing (HPC) and…
PySEMTools is a Python-based library for post-processing simulation data produced with high-order hexahedral elements in the context of the spectral element method in computational fluid dynamics. It aims to minimize intermediate steps…
Microfluidics-based biochips are soon expected to revolutionize clinical diagnosis, DNA sequencing, and other laboratory procedures involving molecular biology. Most microfluidic biochips are based on the principle of continuous fluid flow…
Selective plane illumination microscopy (SPIM), or light sheet, is a powerful three-dimensional imaging approach. However, access to and interfacing microscopes with microfluidics have remained challenging. Complex interfacing with…
Due to its flexible architecture, FPGAs support unique, deep hardware pipeline implementations for accelerating HPC applications. However, these devices are quite new in the HPC space, and thus, have been scarcely explored outside some…
A low cost remote imaging platform for biological applications was developed. The "Picroscope" is a device that allows the user to perform longitudinal imaging studies on multi-well cell culture plates. Here we present the network…
SPYTHIA is an event level Monte Carlo program which simulates particle production and decay at lepton and hadron colliders in the Minimal Supersymmetric Standard Model (MSSM). It is an extension of PYTHIA 5.7, with all of its previous…
A system architecture is suggested for a System on Chip that will combine several different memristor-based, bio-inspired computation arrays with inter- and intra-chip communication. It will serve as a benchmark system for future…
Structured illumination microscopy (SIM) has attained high spatiotemporal delineation of subcellular architecture, yet offers limited insight into chemical composition. We develop Chem-SIM, a structured-illumination fluorescence detected…
Recent years have witnessed the growing scholarly interest in the next-generation general-purpose computers. Various innovative computing modes have been proposed, such as optical, quantum phenomena, and DNA-based modes. Sequential logic…
Abstract: Bionic learning with fused sensing, memory and processing functions outperforms artificial neural networks running on silicon chips in terms of efficiency and footprint. However, digital hardware implementation of bionic learning…
While self-supervised pretraining has reduced vision systems' reliance on synthetic data, simulation remains an indispensable tool for closed-loop optimization and rigorous out-of-distribution (OOD) evaluation. However, modern simulation…
The BIOSCAN project, led by the International Barcode of Life Consortium, seeks to study changes in biodiversity on a global scale. One component of the project is focused on studying the species interaction and dynamics of all insects. In…
Two-dimensional electronic spectroscopy (2DES) is a powerful tool for exploring quantum effects in energy transport within photosynthetic systems and investigating novel material properties. However, simulating the dynamics of these…
Building a deployable PhysiComp that merges form and function typically involves a significant investment of time and skill in digital electronics, 3D modeling and mechanical design. We aim to help designers quickly create prototypes by…
Biocomputing systems based on engineered bacteria can lead to novel tools for environmental monitoring and detection of metabolic diseases. In this paper, we propose a Bacterial Molecular Computing on a Chip (BMCoC) using microfluidic and…
This paper presents verification and implementation methods that have been developed for the design of the BrainScaleS-2 65nm ASICs. The 2nd generation BrainScaleS chips are mixed-signal devices with tight coupling between full-custom…
In this paper we present a memristor-inspired computational method for obtaining a type of running spectrogram or fingerprint of epileptiform activity generated by rodent hippocampal spheroids. It can be used to compute on the fly and with…
Stacked intelligent metasurfaces (SIMs) facilitate computation by cascaded programmable layers so that part of the signal processing can be performed in the wave domain during signal propagation, rather than solely after reception. This…
In research labs, there is often a need to customise software at every step in a given bioinformatics workflow, but traditionally it has been difficult to obtain both a high degree of customisability and good performance.…