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This dissertation focuses on two fundamental sorting problems: string sorting and suffix sorting. The first part considers parallel string sorting on shared-memory multi-core machines, the second part external memory suffix sorting using…

Data Structures and Algorithms · Computer Science 2018-08-06 Timo Bingmann

Machine learning potentials have achieved great success in accelerating atomistic simulations. Many of them relying on atom-centered local descriptors are natural for parallelization. More recent message passing neural network (MPNN) models…

Chemical Physics · Physics 2025-06-10 Junfan Xia , Bin Jiang

Quicksort is an instructive classroom approach to parallel sorting on distributed memory parallel computers with many opportunities for illustrating specific implementation alternatives and tradeoffs with common communication interfaces…

Distributed, Parallel, and Cluster Computing · Computer Science 2018-10-25 Jesper Larsson Träff

The main computing tasks of a finite element code(FE) for solving partial differential equations (PDE's) are the algebraic system assembly and the iterative solver. This work focuses on the first task, in the context of a hybrid MPI+X…

Mathematical Software · Computer Science 2019-05-28 Marta Garcia-Gasulla , Guillaume Houzeaux , Roger Ferrer , Antoni Artigues , Victor López , Jesús Labarta , Mariano Vázquez

We present and evaluate GPU Bucket Sort, a parallel deterministic sample sort algorithm for many-core GPUs. Our method is considerably faster than Thrust Merge (Satish et.al., Proc. IPDPS 2009), the best comparison-based sorting algorithm…

Distributed, Parallel, and Cluster Computing · Computer Science 2010-02-25 Frank Dehne , Hamidreza Zaboli

MPI implementations commonly rely on explicit memory-copy operations, incurring overhead from redundant data movement and buffer management. This overhead notably impacts HPC workloads involving intensive inter-processor communication. In…

Distributed, Parallel, and Cluster Computing · Computer Science 2025-10-17 Miryeong Kwon , Donghyun Gouk , Hyein Woo , Junhee Kim , Jinwoo Baek , Kyungkuk Nam , Sangyoon Ji , Jiseon Kim , Hanyeoreum Bae , Junhyeok Jang , Hyunwoo You , Junseok Moon , Myoungsoo Jung

A hybrid scheme that utilizes MPI for distributed memory parallelism and OpenMP for shared memory parallelism is presented. The work is motivated by the desire to achieve exceptionally high Reynolds numbers in pseudospectral computations of…

Computational Physics · Physics 2010-03-24 Pablo D. Mininni , Duane L. Rosenberg , Raghu Reddy , Annick Pouquet

To obtain a better understanding of the trade-offs between various objectives, Bi-Objective Integer Programming (BOIP) algorithms calculate the set of all non-dominated vectors and present these as the solution to a BOIP problem.…

Optimization and Control · Mathematics 2019-09-10 William Pettersson , Melih Ozlen

We describe the design, implementation and performance of the new hybrid parallelization scheme in our Monte Carlo radiative transfer code SKIRT, which has been used extensively for modeling the continuum radiation of dusty astrophysical…

Instrumentation and Methods for Astrophysics · Physics 2017-05-16 Sam Verstocken , Dries Van De Putte , Peter Camps , Maarten Baes

Sorting is the one of the fundamental tasks of modern data management systems. With Disk I/O being the most-accused performance bottleneck and more computation-intensive workloads, it has come to our attention that in heterogeneous…

Databases · Computer Science 2019-09-19 Yuanjing Shi , Zhaoxing Li

Adaptive indexing is a concept that considers index creation in databases as a by-product of query processing; as opposed to traditional full index creation where the indexing effort is performed up front before answering any queries.…

Databases · Computer Science 2014-04-09 Victor Alvarez , Felix Martin Schuhknecht , Jens Dittrich , Stefan Richter

Mixed-integer optimisation problems can be computationally challenging. Here, we introduce and analyse two efficient algorithms with a specific sequential design that are aimed at dealing with sampled problems within this class. At each…

Optimization and Control · Mathematics 2023-03-07 Mohammadreza Chamanbaz , Roland Bouffanais

This paper aims to better understand the strengths and limitations of adopting learned-based approaches in sequential sorting numerical data, via two main research steps. First, we study different learned models for distribution-based…

Data Structures and Algorithms · Computer Science 2024-07-03 Paolo Ferragina , Mattia Odorisio

A novel integer value-sorting technique is proposed replacing bucket sort, distribution counting sort and address calculation sort family of algorithms. It requires only constant amount of additional memory. The technique is inspired from…

Data Structures and Algorithms · Computer Science 2012-11-02 A. Emre Cetin

Message Passing Interface (MPI) is the most commonly used paradigm in writing parallel programs since it can be employed not only within a single processing node but also across several connected ones. Data flow analysis concepts,…

Programming Languages · Computer Science 2013-11-06 Alaa Ismail Elnashar , Sultan Aljahdali , Mosaid Al Sadhan

A sorted set (or map) is one of the most used data types in computer science. In addition to standard set operations, like Insert, Remove, and Contains, it can provide set-set operations such as Union,Intersection, and Difference. Each of…

Distributed, Parallel, and Cluster Computing · Computer Science 2023-06-27 Ilya Kokorin , Vitaly Aksenov , Alena Martsenyuk

The article investigates the relationship between time complexity and energy consumption in sorting algorithms, focusing on commonly-used algorithms implemented in Java: Bubble Sort, Counting Sort, Merge Sort, and Quick Sort. The…

Software Engineering · Computer Science 2024-05-09 Kristina Carter , Su Mei Gwen Ho , Mathias Marquar Arhipenko Larsen , Martin Sundman , Maja H. Kirkeby

Sorting algorithms are the deciding factor for the performance of common operations such as removal of duplicates or database sort-merge joins. This work focuses on 32-bit integer keys, optionally paired with a 32-bit value. We present a…

Data Structures and Algorithms · Computer Science 2010-09-07 Jan Wassenberg , Peter Sanders

The true costs of high performance computing are currently dominated by software. Addressing these costs requires shifting to high productivity languages such as Matlab. MatlabMPI is a Matlab implementation of the Message Passing Interface…

Astrophysics · Physics 2007-05-23 Jeremy Kepner , Stan Ahalt

In this paper, we propose an efficient and accurate message-passing interface (MPI)-based parallel simulator for streamer discharges in three dimensions using the fluid model. First, we propose a new second-order semi-implicit scheme for…

Computational Physics · Physics 2021-12-13 Bo Lin , Chijie Zhuang , Zhenning Cai , Rong Zeng , Weizhu Bao
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