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Computational protein design aims at constructing novel or improved functions on the structure of a given protein backbone and has important applications in the pharmaceutical and biotechnical industry. The underlying combinatorial…

Data Structures and Algorithms · Computer Science 2011-03-29 Stefan Canzar , Nora C. Toussaint , Gunnar W. Klau

The Submodular Bin Packing (SMBP) problem asks for packing unsplittable items into a minimal number of bins for which the capacity utilization function is submodular. SMBP is equivalent to chance-constrained and robust bin packing problems…

Optimization and Control · Mathematics 2023-09-12 Liding Xu , Claudia D'Ambrosio , Sonia Haddad Vanier , Emiliano Traversi

High-dimensional black-box optimisation remains an important yet notoriously challenging problem. Despite the success of Bayesian optimisation methods on continuous domains, domains that are categorical, or that mix continuous and…

Machine Learning · Statistics 2021-06-11 Xingchen Wan , Vu Nguyen , Huong Ha , Binxin Ru , Cong Lu , Michael A. Osborne

Dimension reduction algorithms are a crucial part of many data science pipelines, including data exploration, feature creation and selection, and denoising. Despite their wide utilization, many non-linear dimension reduction algorithms are…

Machine Learning · Statistics 2024-08-06 Ryan Murray , Adam Pickarski

We introduce the subset assignment problem in which items of varying sizes are placed in a set of bins with limited capacity. Items can be replicated and placed in any subset of the bins. Each (item, subset) pair has an associated cost. Not…

Data Structures and Algorithms · Computer Science 2016-10-04 Shahram Ghandeharizadeh , Sandy Irani , Jenny Lam

In many applications, we need algorithms which can align partially overlapping point sets and are invariant to the corresponding transformations. In this work, a method possessing such properties is realized by minimizing the objective of…

Computer Vision and Pattern Recognition · Computer Science 2023-07-06 Wei Lian , Wangmeng Zuo

Binary codes are widely used to represent the data due to their small storage and efficient computation. However, there exists an ambiguity problem that lots of binary codes share the same Hamming distance to a query. To alleviate the…

Computer Vision and Pattern Recognition · Computer Science 2020-06-12 Zhenyu Weng , Yuesheng Zhu

The 0-1 knapsack problem is a well-known combinatorial optimisation problem. Approximation algorithms have been designed for solving it and they return provably good solutions within polynomial time. On the other hand, genetic algorithms…

Neural and Evolutionary Computing · Computer Science 2014-04-04 Jun He , Feidun He , Hongbin Dong

Bin packing is a classic optimization problem with a wide range of applications, from load balancing to supply chain management. In this work, we study the online variant of the problem, in which a sequence of items of various sizes must be…

Data Structures and Algorithms · Computer Science 2024-04-18 Spyros Angelopoulos , Shahin Kamali , Kimia Shadkami

Deep neural networks suffer from storing millions and billions of weights in memory post-training, making challenging memory-intensive models to deploy on embedded devices. The weight-sharing technique is one of the popular compression…

Computer Vision and Pattern Recognition · Computer Science 2025-01-07 Rasa Khosrowshahli , Shahryar Rahnamayan , Beatrice Ombuki-Berman

With endless amounts of data and very limited bandwidth, fast data compression is one solution for the growing datasharing problem. Compression helps lower transfer times and save memory, but if the compression takes too long, this no…

Distributed, Parallel, and Cluster Computing · Computer Science 2023-06-21 David Noel , Elizabeth Graham , Liyuan Liu

Random embedding has been applied with empirical success to large-scale black-box optimization problems with low effective dimensions. This paper proposes the EmbeddedHunter algorithm, which incorporates the technique in a hierarchical…

Artificial Intelligence · Computer Science 2016-11-29 Abdullah Al-Dujaili , S. Suresh

Low-dimensional embeddings for data from disparate sources play critical roles in multi-modal machine learning, multimedia information retrieval, and bioinformatics. In this paper, we propose a supervised dimensionality reduction method…

Machine Learning · Computer Science 2021-01-15 Yanjun Li , Bihan Wen , Hao Cheng , Yoram Bresler

Neuromorphic computing with crossbar arrays has emerged as a promising alternative to improve computing efficiency for machine learning. Previous work has focused on implementing crossbar arrays to perform basic mathematical operations.…

Machine Learning · Computer Science 2024-11-08 W. Haensch

This paper introduces and approximately solves a multi-component problem where small rectangular items are produced from large rectangular bins via guillotine cuts. An item is characterized by its width, height, due date, and earliness and…

Data Structures and Algorithms · Computer Science 2017-07-28 S. Polyakovskiy , A. Makarowsky , R. M'Hallah

Bayesian optimization (BO) is a flexible and powerful framework that is suitable for computationally expensive simulation-based applications and guarantees statistical convergence to the global optimum. While remaining as one of the most…

Distributed, Parallel, and Cluster Computing · Computer Science 2021-08-16 Anh Tran

Hypergraph matching has recently become a popular approach for solving correspondence problems in computer vision as it allows to integrate higher-order geometric information. Hypergraph matching can be formulated as a third-order…

Computer Vision and Pattern Recognition · Computer Science 2016-11-17 Quynh Nguyen , Francesco Tudisco , Antoine Gautier , Matthias Hein

We introduce and study the complexity of Path Packing. Given a graph $G$ and a list of paths, the task is to embed the paths edge-disjoint in $G$. This generalizes the well known Hamiltonian-Path problem. Since Hamiltonian Path is…

Computational Complexity · Computer Science 2019-10-02 Jan Dreier , Janosch Fuchs , Tim A. Hartmann , Philipp Kuinke , Peter Rossmanith , Bjoern Tauer , Hung-Lung Wang

We study parallel algorithms for the classical balls-into-bins problem, in which $m$ balls acting in parallel as separate agents are placed into $n$ bins. Algorithms operate in synchronous rounds, in each of which balls and bins exchange…

Distributed, Parallel, and Cluster Computing · Computer Science 2019-04-17 Christoph Lenzen , Merav Parter , Eylon Yogev

We wish to minimize the resources used for network coding while achieving the desired throughput in a multicast scenario. We employ evolutionary approaches, based on a genetic algorithm, that avoid the computational complexity that makes…

Networking and Internet Architecture · Computer Science 2016-11-15 Minkyu Kim , Muriel Medard , Varun Aggarwal , Una-May O'Reilly , Wonsik Kim , Chang Wook Ahn , Michelle Effros