Related papers: Scaled tree fractals do not strictly self-assemble
Self-assembly is the autonomous organization of components into patterns or structures: an essential ingredient of biology and a desired route to complex organization. At equilibrium, the structure is encoded through specific interactions,…
We consider two seemingly very different self-assembly processes: formation of viral capsids, and crystallization of sticky discs. At low temperatures, assembly is ineffective, since there are many metastable disordered states, which are a…
We consider a special type of self-similar sets, called fractal squares, and give a brief review on recent results and unsolved issues with an emphasis on their topological properties.
We derive exact statistical properties of a class of recursive fragmentation processes. We show that introducing a fragmentation probability 0<p<1 leads to a purely algebraic size distribution in one dimension, P(x) ~ x^{-2p}. In d…
We consider non cooperative binding in so called `temperature 1', in deterministic (here called {\it confluent}) tile self-assembly systems (1-TAS) and prove the standing conjecture that such systems do not have universal computational…
Mutually repelling particles form spontaneously ordered clusters when forced into confinement. The clusters may adopt similar spatial arrangements even if the underlying particle interactions are contrastingly different. Here we demonstrate…
Tile Automata is a recently defined model of self-assembly that borrows many concepts from cellular automata to create active self-assembling systems where changes may be occurring within an assembly without requiring attachment. This model…
Biomolecular condensates self-assemble when proteins and nucleic acids spontaneously demix to form droplets within the crowded intracellular milieu. This simple mechanism underlies the formation of a wide variety of membraneless…
We canonically identify the groups of isometries and dilations of local fields and their rings of integers with subgroups of the automorphism group of the $(d+1)$-regular tree $\widetilde T_{d+1}$, where $d$ is the residual degree. Then we…
Multifarious assembly models consider multiple structures assembled from a shared set of components, reflecting the efficient usage of components in biological self-assembly. These models are subject to a high-dimensional parameter space,…
Randomly branching polymers with {\em annealed} connectivity are model systems for ring polymers and chromosomes. In this context, the branched structure represents transient folding induced by topological constraints. Here we present…
Many models of fractal growth patterns (like Diffusion Limited Aggregation and Dielectric Breakdown Models) combine complex geometry with randomness; this double difficulty is a stumbling block to their elucidation. In this paper we…
Wet granular materials are characterized by a defined bond energy in their particle interaction such that breaking a bond implies an irreversible loss of a fixed amount of energy. Associated with the bond energy is a nonequilibrium…
In this paper, we propose to enumerate all different configurations belonging to a specific class of fractals: A binary initial tile is selected and a finite recursive tiling process is engaged to produce auto-similar binary patterns. For…
Cohesive particles form agglomerates that are usually very porous. Their geometry, particularly their fractal dimension, depends on the agglomeration process (diffusion-limited or ballistic growth by adding single particles or…
A self-organization is an universal phenomenon in nature and, in particular, is highly important in materials systems and biology. We proposed a new theory that allowed us to model the most challenging cases of atomic self-assembling whose…
We apply a simple model system of patchy particles to study monodisperse self-assembly, using the Platonic solids as target structures. We find marked differences between the assembly behaviours of the different systems. Tetrahedra,…
Majumder, Reif and Sahu have presented a stochastic model of reversible, error-permitting, two-dimensional tile self-assembly, and showed that restricted classes of tile assembly systems achieved equilibrium in (expected) polynomial time.…
We study a random aggregation process involving rectangular clusters. In each aggregation event, two rectangles are chosen at random and if they have a compatible side, either vertical or horizontal, they merge along that side to form a…
The Late Pleistocene Antarctic temperature variation curve is decomposed into two components: cyclic and high frequency, stochastic. For each of these components, a mathematical model is developed which shows that the cyclic and stochastic…