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We present an open-source Matlab framework, titled iFluid, for simulating the dynamics of integrable models using the theory of generalized hydrodynamics (GHD). The framework provides an intuitive interface, enabling users to define and…

Statistical Mechanics · Physics 2020-03-18 Frederik S. Møller , Jörg Schmiedmayer

Training GUI agents with traditional centralized methods faces significant cost and scalability challenges. Federated learning (FL) offers a promising solution, yet its potential is hindered by the lack of benchmarks that capture…

Multiagent Systems · Computer Science 2026-04-17 Wenhao Wang , Haoting Shi , Mengying Yuan , Yiquan Lin , Panrong Tong , Hanzhang Zhou , Guangyi Liu , Pengxiang Zhao , Yue Wang , Siheng Chen

The rapid growth of deep learning has driven exponential increases in model parameters and computational demands. NVIDIA GPUs and their CUDA-based software ecosystem provide robust support for parallel computing, significantly alleviating…

Distributed, Parallel, and Cluster Computing · Computer Science 2025-07-08 Jiaqi Lv , Xufeng He , Yanchen Liu , Xu Dai , Aocheng Shen , Yinghao Li , Jiachen Hao , Jianrong Ding , Yang Hu , Shouyi Yin

This paper introduces PolyDiM, an open-source C++ library tailored for the development and implementation of polytopal discretization methods for partial differential equations. The library provides robust and modular tools to support…

Numerical Analysis · Mathematics 2025-05-21 Stefano Berrone , Andrea Borio , Gioana Teora , Fabio Vicini

Combined-resolution simulations are an effective way to study molecular properties across a range of length- and time-scales. These simulations can benefit from adaptive boundaries that allow the high-resolution region to adapt (change size…

Computational Physics · Physics 2018-05-09 Jason A. Wagoner , Vijay S. Pande

Embedding models are a cornerstone of modern AI. Driven by Multimodal Large Language Models (MLLMs), they have made great progress in architecture and data curation, while the holistic paradigm is still limited to SSC, i.e., single input,…

Machine Learning · Computer Science 2025-11-24 Zhicheng Wang , Chen Ju , Xu Chen , Shuai Xiao , Jinsong Lan , Xiaoyong Zhu , Ying Chen , Zhiguo Cao

The present paper deals with the problem of improving the efficiency of large scale turbulent flow simulations. The high-fidelity methods for modelling turbulent flows become available for a wider range of applications thanks to the…

Computational Physics · Physics 2018-04-10 Boris Krasnopolsky

The Model Context Protocol (MCP) is a recently proposed interoperability standard that unifies how AI agents connect with external tools and data sources. By defining a set of common client-server message exchange clauses, MCP replaces…

Cryptography and Security · Computer Science 2026-03-12 Nanzi Yang , Weiheng Bai , Kangjie Lu

Data pre-processing is a fundamental component in any data-driven application. With the increasing complexity of data processing operations and volume of data, Cylon, a distributed dataframe system, is developed to facilitate data…

Distributed, Parallel, and Cluster Computing · Computer Science 2023-01-02 Kaiying Shan , Niranda Perera , Damitha Lenadora , Tianle Zhong , Arup Sarker , Supun Kamburugamuve , Thejaka Amila Kanewela , Chathura Widanage , Geoffrey Fox

We present a comparison of several modern C++ libraries providing high-level interfaces for programming multi- and many-core architectures on top of CUDA or OpenCL. The comparison focuses on the solution of ordinary differential equations…

Mathematical Software · Computer Science 2017-10-13 Denis Demidov , Karsten Ahnert , Karl Rupp , Peter Gottschling

Continuum solvent models have become a standard technique in the context of electronic structure calculations, yet, no implementations have been reported capable to perform molecular dynamics at solid-liquid interfaces. We propose here such…

Chemical Physics · Physics 2015-05-13 Veronica M. Sanchez , Mariela Sued , Damian A. Scherlis

We develop an efficient parallel multiscale method that bridges the atomistic and mesoscale regimes, from nanometer to micron and beyond, via concurrent coupling of atomistic simulation and mesoscopic dynamics. In particular, we combine an…

Computational Physics · Physics 2020-12-23 Yuying Wang , Zhen Li , Junbo Xu , Chao Yang , George Em Karniadakis

OpenSBLI is an open-source code-generation system for compressible fluid dynamics (CFD) on heterogeneous computing architectures. Written in Python, OpenSBLI is an explicit high-order finite-difference solver on structured curvilinear…

Computational Physics · Physics 2021-07-14 David J. Lusher , Satya P. Jammy , Neil D. Sandham

We present a multiparticle collision dynamics (MPC) implementation of layered immiscible fluids $A$ and $B$ of different shear viscosities separated by planar interfaces. The simulated flow profile for imposed steady shear motion and the…

Soft Condensed Matter · Physics 2021-09-07 Zihan Tan , Vania Calandrini , Jan K. G. Dhont , Gerhard Nägele , Roland G. Winkler

Developing efficient path integral (PI) methods for atomistic simulations of vibrational spectra in heterogeneous condensed phases and interfaces has long been a challenging task. Here, we present the h-CMD method, short for hybrid centroid…

Chemical Physics · Physics 2025-05-08 Dil K. Limbu , Nathan London , Md Omar Faruque , Mohammad R. Momeni

We discuss in detail a recently proposed hybrid particle-continuum scheme for complex fluids and evaluate it at the example of a confined homopolymer solution in slit geometry. The hybrid scheme treats polymer chains near the impenetrable…

Soft Condensed Matter · Physics 2016-10-28 Shuanhu Qi , Hans Behringer , Thorsten Raasch , Friederike Schmid

Aqueous solid-liquid interfaces (SLI) are ubiquitous in nature and technology, often hosting molecular-level processes with macroscopic consequences. Molecular dynamics (MD) simulations offer a tool of choice to investigate interfacial…

Soft Condensed Matter · Physics 2025-08-12 Mahdi Tavakol , Kislon Voïtchovsky

High-accuracy, high-efficiency physics-based fluid-solid interaction is essential for reality modeling and computer animation in online games or real-time Virtual Reality (VR) systems. However, the large-scale simulation of incompressible…

Graphics · Computer Science 2023-05-08 Jin Li , Yang Gao , Ju Dai , Shuai Li , Aimin Hao , Hong Qin

High-level I/O libraries, such as HDF5 and PnetCDF, are commonly used by large-scale scientific applications to perform I/O tasks in parallel. These I/O libraries store the metadata such as data types and dimensionality along with the raw…

Distributed, Parallel, and Cluster Computing · Computer Science 2025-06-19 Youjia Li , Robert Latham , Robert Ross , Ankit Agrawal , Alok Choudhary , Wei-Keng Liao

We present a "multipatch" infrastructure for numerical simulation of fluid problems in which sub-regions require different gridscales, different grid geometries, different physical equations, or different reference frames. Its key element…

Instrumentation and Methods for Astrophysics · Physics 2018-07-11 Hotaka Shiokawa , Roseanne M. Cheng , Scott C. Noble , Julian H. Krolik