Related papers: Optimal program-size complexity for self-assembly …
We systematically study the design of simple patchy sphere models that reversibly self-assemble into monodisperse icosahedral clusters. We find that the optimal patch width is a compromise between structural specificity (the patches must be…
The inversion of spectropolarimetric observations of the solar upper atmosphere is one of the most challenging goals in solar physics. If we account for all relevant ingredients of the spectral line formation process, such as the…
Self-assembly is ubiquitous in nature, particularly in biology, where it underlies the formation of protein quaternary structure and protein aggregation. Quaternary structure assembles deterministically and performs a wide range of…
We present fast simulation methods for the self-assembly of complex shapes in two dimensions. The shapes are modeled via a general boundary curve and interact via a standard volume term promoting overlap and an interpenetration penalty. To…
We develop an optimization-based approach to the problem of reconstructing temperature-dependent material properties in complex thermo-fluid systems described by the equations for the conservation of mass, momentum and energy. Our goal is…
The synthesis of complex materials through the self-assembly of particles at the nanoscale provides opportunities for the realization of novel material properties. However, the inverse design process to create experimentally feasible…
We discuss the thermodynamics of the O(N) nonlinear sigma model in 1+1 dimensions. In particular we investigate the NLO 1/N correction to the 1PI finite temperature effective potential expressed in terms of an auxiliary field. The effective…
We present an active tile assembly model which extends Winfree's abstract tile assembly model to tiles that are capable of transmitting and receiving binding site activation signals. In addition, we introduce a mathematical framework to…
Given a simplicial complex with weights on its simplices, and a nontrivial cycle on it, we are interested in finding the cycle with minimal weight which is homologous to the given one. Assuming that the homology is defined with integer…
Packing is a classical problem where one is given a set of subsets of Euclidean space called objects, and the goal is to find a maximum size subset of objects that are pairwise non-intersecting. The problem is also known as the Independent…
The thermodynamics of the O(N) nonlinear sigma model in 1+1 dimensions is studied. We calculate the finite temperature effective potential in leading order in the 1/N expansion and show that at this order the effective potential can be made…
A two-dimensional configuration is a coloring of the infinite grid Z^2 with finitely many colors. For a finite subset D of Z^2, the D-patterns of a configuration are the colored patterns of shape D that appear in the configuration. The…
The decades-long search for a shape that tiles the plane only aperiodically under translations and rotations recently ended with the discovery of the `spectre' aperiodic monotile. In this setting we study the dimer model, in which dimers…
The storage of large-scale quantum information at finite temperature requires an autonomous and reliable quantum hard drive, also known as a self-correcting quantum memory. It is a long-standing open problem to find a self-correcting…
The design of irregular planar phased arrays (PAs) characterized by a highly-modular architecture is addressed. By exploiting the property of self-replicating tile shapes, also known as rep-tiles, the arising array layouts consist of tiles…
In this work we consider the inverse problem of finding guiding pattern shapes that result in desired self-assembly morphologies of block copolymer melts. Specifically, we model polymer self-assembly using Self-Consistent Field Theory and…
Patterned self-assembly tile set synthesis (PATS) aims at finding a minimum tile set to uniquely self-assemble a given rectangular (color) pattern. For k >= 1, k-PATS is a variant of PATS that restricts input patterns to those with at most…
We consider the construction of point processes from tilings, with equal volume tiles, of d-dimensional Euclidean space. We show that one can generate, with simple algorithms ascribing one or more points to each tile, point processes which…
Most approaches for designing self-assembled materials focus on the thermodynamic stability of a target structure or crystal polymorph. Yet in practice, the outcome of a self-assembly process is often controlled by kinetic pathways. Here we…
Discrete tomography deals with reconstructing finite spatial objects from lower dimensional projections and has applications for example in timetable design. In this paper we consider the problem of reconstructing a tile packing from its…