Related papers: Peierls-Nabarro Barrier and Protein Loop Propagati…
We study effects of Kac-Baker long-range dispersive interaction (LRI) between particles on kink properties in the discrete sine-Gordon model. We show that the kink width increases indefinitely as the range of LRI grows only in the case of…
A discrete phi^4 system is proposed which preserves the topological lower bound on the kink energy. Existence of static kink solutions saturating this lower bound and occupying any position relative to the lattice is proved. Consequently,…
Considering a two-dimensional Bose-Hubbard spinor lattice with weak nearest neighbour interactions and no particle transfer between sites, we theoretically study the transport of energy from one initially excited dimer, to the rest of the…
A spatially discrete version of the general kink-bearing nonlinear Klein-Gordon model in (1+1) dimensions is constructed which preserves the topological lower bound on kink energy. It is proved that, provided the lattice spacing h is…
Kink dynamics in spatially discrete nonlinear Klein-Gordon systems is considered. For special choices of the substrate potential, such systems support continuous translation orbits of static kinks with no (classical) Peierls-Nabarro…
The motion involved in barrier crossing for protein folding are investigated in terms of the chain dynamics of the polymer backbone, completing the microscopic description of protein folding presented in the previous paper. Local reaction…
Nonlinear molecular excitations in DNA have traditionally been modelled using the nonlinear Schr\"odinger equation (NLSE). An alternative approach is based on the plane-base rotator model and the SU(2)/U(1) generalized spin coherent states,…
We develop a dynamical model of the propagating nonlinear localized excitations, supersonic kinks, in the cation layer in a silicate mica crystal. We start from purely electrostatic Coulomb interaction and add the Ziegler-Biersack-Littmark…
We analyze the interaction of lattice vibrations (phonon wave-packets) with an asymmetric kink soliton initially at rest. We employ the $\phi^6$ model in one space and one time dimensions for various lattice spacings and consider two…
The renormalization of the electrons in cuprate superconductors is characterized by the kink in the quasiparticle dispersion. Here the bilayer coupling effect on the quasiparticle dispersion kink in the electron-doped bilayer cuprate…
Protein folding processes are generally described statistically with the help of multidimensional free energy landscape, typically reduced to a 1-D free energy profile along good reaction co-ordinate. There are many physical parameters…
We consider the generalization of the Kramers escape over a barrier problem to the case of a long chain molecule. The problem involves the motion of a chain molecule of $N$ segments across a region where the free energy per segment is…
This paper focuses on the probability that a portion of DNA closes on itself through thermal fluctuations. We investigate the dependence of this probability upon the size r of a protein bridge and/or the presence of a kink at half DNA…
We consider the motion of semiflexible polymers in double-well potentials. We calculate shape, energy, and effective diffusion constant of kink excitations, and in particular their dependence on the bending rigidity of the semiflexible…
We study the dynamics of magnetic domain walls in the Peierls potential due to the discreteness of the crystal lattice. The propagation of a narrow domain wall (comparable to the lattice parameter) under the effect of a magnetic field…
We study a class of discrete focusing nonlinear Schr{\"o}dinger equations (DNLS) with general nonlocal interactions. We prove the existence of onsite and offsite discrete solitary waves, which bifurcate from the trivial solution at the…
In this paper we consider two models of soliton dynamics (the sine Gordon and the \phi^4 equations) on a 1-dimensional lattice. We are interested in particular in the behavior of their kink-like solutions inside the Peierls- Nabarro barrier…
In this thesis, we have investigated the spreading of quantum correlations in isolated lattice models with short- or long-range interactions driven far from equilibrium via sudden global quenches. A general theoretical approach relying on a…
We consider the generalization of the Kramers escape over a barrier problem to the case of a long chain molecule. It involves the motion of chain molecule of N segments across a region where the free energy per segment is higher, so that it…
Determining the three-dimensional structure of a protein from its amino-acid sequence remains a fundamental problem in biophysics. The discrete Frenet geometry of the C$_\alpha$ backbone can be mapped, via a Hasimoto-type transform, onto a…