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Simulation-based inference plays a major role in modern statistics, and often employs either reallocating (as in a randomization test) or resampling (as in bootstrapping). Reallocating mimics random allocation to treatment groups, while…

Statistics Theory · Mathematics 2017-08-08 Kari Lock Morgan

In large populations, multiple beneficial mutations may be simultaneously spreading. In asexual populations, these mutations must either arise on the same background or compete against each other. In sexual populations, recombination can…

Populations and Evolution · Quantitative Biology 2013-12-19 D. B. Weissman , O. Hallatschek

This paper is devoted to a nonlocal dispersal logistic model with seasonal succession in one-dimensional bounded habitat, where the seasonal succession accounts for the effect of two different seasons. Firstly, we provide the…

Analysis of PDEs · Mathematics 2022-12-08 Zhenzhen Li , Binxiang Dai

Many existing approaches for generating predictions in settings with distribution shift model distribution shifts as adversarial or low-rank in suitable representations. In various real-world settings, however, we might expect shifts to…

Machine Learning · Statistics 2023-10-31 Kirk Bansak , Elisabeth Paulson , Dominik Rothenhäusler

Design of experiments, random search, initialization of population-based methods, or sampling inside an epoch of an evolutionary algorithm use a sample drawn according to some probability distribution for approximating the location of an…

Neural and Evolutionary Computing · Computer Science 2020-04-27 Laurent Meunier , Carola Doerr , Jeremy Rapin , Olivier Teytaud

When an advantageous mutation occurs in a population, the favorable allele may spread to the entire population in a short time, an event known as a selective sweep. As a result, when we sample $n$ individuals from a population and trace…

Probability · Mathematics 2007-05-23 Rick Durrett , Jason Schweinsberg

Computer modelling for evolutionary systems consists in: 1) to store in the memory the individual features of each member of a large population; and 2) to update the whole system repeatedly, as time goes by, according to some prescribed…

Statistical Mechanics · Physics 2007-05-23 Paulo Murilo Castro de Oliveira

Microbial populations generally evolve in volatile environments, under conditions fluctuating between harsh and mild, e.g. as the result of sudden changes in toxin concentration or nutrient abundance. Environmental variability thus shapes…

Populations and Evolution · Quantitative Biology 2023-12-07 Matthew Asker , Lluís Hernández-Navarro , Alastair M. Rucklidge , Mauro Mobilia

We consider a population structured by a space variable and a phenotypical trait, submitted to dispersion, mutations, growth and nonlocal competition. This population is facing an environmental gradient: the optimal trait for survival…

Analysis of PDEs · Mathematics 2019-10-14 Gwenaël Peltier

The emergence of collective decision in swarms and their coordinated response to complex environments underscore the central role played by social transmission of information. Here, the different possible origins of information flow…

Adaptation and Self-Organizing Systems · Physics 2017-05-23 Mohammad Komareji , Yilun Shang , Roland Bouffanais

We consider the diffusion approximation of branching processes in random environment (BPREs). This diffusion approximation is similar to and mathematically more tractable than BPREs. We obtain the exact asymptotic behavior of the survival…

Probability · Mathematics 2013-10-02 Christian Böinghoff , Martin Hutzenthaler

Complex adaptive systems have been the subject of much recent attention. It is by now well-established that members (`agents') tend to self-segregate into opposing groups characterized by extreme behavior. However, while different social…

Condensed Matter · Physics 2009-11-07 Shahar Hod , Ehud Nakar

We consider populations with time-varying growth rates living in sinks. Each population, when isolated, would become extinct. Dispersal-induced growth (DIG) occurs when the populations are able to persist and grow exponentially when…

Dynamical Systems · Mathematics 2024-02-21 Michel Benaim , Claude Lobry , Tewfik Sari , Edouard Strickler

This review paper presents the known results on the asymptotics of the survival probability and limit theorems conditioned on survival of critical and subcritical branching processes in IID random environments. The key assumptions of the…

Probability · Mathematics 2011-10-28 Elena Dyakonova , Vladimir Vatutin , Serik Sagitov

Quasispecies theory predicts that there is a critical mutation probability above which a viral population will go extinct. Above this threshold the virus loses the ability to replicate the best adapted genotype, leading to a population…

Probability · Mathematics 2011-09-26 J. Theodore Cox , Rinaldo B. Schinazi

Phase variation, or stochastic switching between alternative states of gene expression, is common among microbes, and may be important in coping with changing environments. We use a theoretical model to assess whether such switching is a…

Populations and Evolution · Quantitative Biology 2010-04-13 Paolo Visco , Rosalind J. Allen , Satya N. Majumdar , Martin R. Evans

Understanding why we age is a long-lived open problem in evolutionary biology. Aging is prejudicial to the individual and evolutionary forces should prevent it, but many species show signs of senescence as individuals age. Here, I will…

Populations and Evolution · Quantitative Biology 2012-01-24 André C. R. Martins

Many life-history traits, like the age at maturity or adult longevity, are important determinants of the generation time. For instance, semelparous species whose adults reproduce once and die have shorter generation times than iteroparous…

Populations and Evolution · Quantitative Biology 2016-04-22 Mélissa Verin , Salomé Bourg , Frédéric Menu , Etienne Rajon

Cyclic, nonhierarchical interactions among biological species represent a general mechanism by which ecosystems are able to maintain high levels of biodiversity. However, species coexistence is often possible only in spatially extended…

Populations and Evolution · Quantitative Biology 2015-03-17 Daniel Groselj , Frank Jenko , Erwin Frey

Species sharing a prey or a predator species may go extinct due to exploitative or apparent competition. We examine whether evolution of the shared species acts as a coexistence mechanism and to what extent the answer depends on the genetic…

Populations and Evolution · Quantitative Biology 2019-02-12 Sebastian J. Schreiber , Swati Patel , Casey terHorst