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In Part I of this two part series, we presented a multi-neighbor dependent contact model for adhesive elastic-plastic particles built upon the method of dimensionality reduction that is valid for the elastic and fully-plastic contact…

Soft Condensed Matter · Physics 2023-09-15 William Zunker , Ken Kamrin

The fundamental understanding of how cells physically interact with each other and their environment is key to understanding their organisation in living tissues. Over the past decades several computational methods have been developed to…

Quantitative Methods · Quantitative Biology 2026-01-22 Paul Van Liedekerke , Jiří Pešek , Kevin Alessandri , Dirk Drasdo

We perform a calculation of dense and hot nuclear matter where the mean interaction between nucleons is described by in-medium effective fields and where we employ analytical approximations of the Fermi integrals. We generalize a previous…

Nuclear Theory · Physics 2024-04-19 Odilon Lourenço , Mariana Dutra , Jérôme Margueron

This paper is devoted to the micro-mechanical origins of the high compressibility of brittle tubular particle assemblies. The material is extremely porous due to the presence of a large hole within the tube-shaped particle. The release of…

Materials Science · Physics 2021-10-26 M. Stasiak , G. Combe , V. Richefeu , G. Armand , J. Zghondi

This work presents a comprehensive three-dimensional third-medium contact framework for modeling complex contact interactions in hyperelastic solids and pneumatically actuated systems. The proposed third-medium formulation embeds a…

Mathematical Physics · Physics 2025-12-04 Bing-Bing Xu , Tianju Xue , Peter Wriggers

This article's main scope is the presentation of a computational method for the simulation of contact problems within the finite element method involving complex and rough surfaces. The approach relies on the MPJR (eMbedded Profile for…

Soft Condensed Matter · Physics 2025-04-03 Jacopo Bonari , Marco Paggi , Daniele Dini

Granular matter takes many paths to pack. Gentle compression, compaction or repetitive tapping can happen in natural and industrial processes. The path influences the packing microstructure, and thus macroscale properties, particularly for…

Soft Condensed Matter · Physics 2023-10-26 A. P. Santos , Ishan Srivastava , Leonardo E. Silbert , Jeremy B. Lechman , Gary S. Grest

Warm dense matter (WDM) -- an exotic state of highly compressed matter -- has attracted high interest in recent years in astrophysics and for dense laboratory systems. At the same time, this state is extremely difficult to treat…

CFD-DEM is used to simulate solid-fluid systems. DEM models the motion of discrete particles while CFD models the fluid phase. Coupling both necessitates the calculation of the void fraction and the solid-fluid forces resulting in a…

Fluid Dynamics · Physics 2023-01-06 Toni El Geitani , Shahab Golshan , Bruno Blais

Computational prediction of enzyme mechanism and protein function requires accurate physics-based models and suitable sampling. We discuss recent advances in large-scale quantum mechanical (QM) modeling of biochemical systems that have…

Chemical Physics · Physics 2021-05-28 Vyshnavi Vennelakanti , Azadeh Nazemi , Rimsha Mehmood , Adam H. Steeves , Heather J. Kulik

The contact dynamics method (CD) is an efficient simulation technique of dense granular media where unilateral and frictional contact problems for a large number of rigid bodies have to be solved. In this paper we present a modified version…

Computational Physics · Physics 2011-04-19 M. Reza Shaebani , Tamas Unger , Janos Kertesz

Microscopic processes on surfaces such as adsorption, desorption, diffusion and reaction of interacting particles can be simulated using kinetic Monte Carlo (kMC) algorithms. Even though kMC methods are accurate, they are computationally…

Mathematical Physics · Physics 2013-12-24 Yannis Pantazis , Markos Katsoulakis

The complex incremental behavior of granular materials is explored with multi-directional loading probes. An advanced discrete element model (DEM) was used to examine the reversible and irreversible strains for small loading probes, which…

Soft Condensed Matter · Physics 2018-12-20 Matthew R. Kuhn , Ali Daouadji

We use a computational model to investigate the emergence of interaction forces between pairs of intruders in a horizontally vibrated granular fluid. The time evolution of a pair of particles shows a maximum of the likelihood to find the…

Soft Condensed Matter · Physics 2020-01-08 Joan Codina , Ignacio Pagonabarraga

Realistic physical systems are characterised by emergent interactions across multiple length and time scales, posing a significant challenge for predictive machine learning (ML) models. Most scientific ML models focus on a narrow range of…

In this paper, we propose a Contact Diffusion Model (CDM), a novel learning-based approach for multi-contact point localization. We consider a robot equipped with joint torque sensors and a force/torque sensor at the base. By leveraging a…

Robotics · Computer Science 2025-09-08 Seo Wook Han , Min Jun Kim

We derive a general dimensionless form for granular locomotion, which is validated in experiments and Discrete Element Method (DEM) simulations. The form instructs how to scale size, mass, and driving parameters in order to relate dynamic…

This study presents an advanced numerical framework that integrates experimentally acquired Atomic Force Microscope (AFM) data into high-fidelity simulations for adhesive rough contact problems, bridging the gap between experimental physics…

Computational Engineering, Finance, and Science · Computer Science 2025-04-04 Maria Rosaria Marulli , Jacopo Bonari , Pasqualantonio Pingue , Marco Paggi

In this work, we present an alternative methodology to solve the particle-fluid interaction in the resolved CFDEM coupling framework. This numerical approach consists of coupling a Discrete Element Method (DEM) with a Computational Fluid…

Fluid Dynamics · Physics 2021-07-14 Ilberto Fonceca , Diego Maza , Raúl Cruz Hidalgo

A new potential of mean force is proposed for colloidal dispersions, which is obtained from coarse grained, pair interactions between colloidal particles formed by the explicit grouping of particles that are themselves groups of atoms and…

Soft Condensed Matter · Physics 2015-10-06 K. A. Terrón-Mejía , R. López-Rendón , A. Gama Goicochea