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On complex algebraic varieties, height functions arising in combinatorial applications fail to be proper. This complicates the description and computation via Morse theory of key topological invariants. Here we establish checkable…

Combinatorics · Mathematics 2021-02-22 Yuliy Baryshnikov , Stephen Melczer , Robin Pemantle

This is a book on higher-categorical diagrams, including pasting diagrams. It aims to provide a thorough and modern reference on the subject, collecting, revisiting and expanding results scattered across the literature, informed by recent…

Category Theory · Mathematics 2024-10-31 Amar Hadzihasanovic

Cluster algebras have recently become an important player in mathematics and physics. In this work, we investigate them through the lens of modern data science, specifically with techniques from network science and machine learning. Network…

Combinatorics · Mathematics 2024-02-26 Pierre-Philippe Dechant , Yang-Hui He , Elli Heyes , Edward Hirst

Recent evidence indicates that the abundance of recurring elementary interaction patterns in complex networks, often called subgraphs or motifs, carry significant information about their function and overall organization. Yet, the…

Disordered Systems and Neural Networks · Physics 2009-11-10 A. Vazquez , R. Dobrin , D. Sergi , J. -P. Eckmann , Z. N. Oltvai , A. -L. Barabasi

In this paper we introduce a novel family of attributed graphs for the purpose of shape discrimination. Our graphs typically arise from variations on the Mapper graph construction, which is an approximation of the Reeb graph for point cloud…

Algebraic Topology · Mathematics 2023-07-03 Justin Curry , Washington Mio , Tom Needham , Osman Berat Okutan , Florian Russold

For a graph embedded into a surface, we relate many combinatorial parameters of the cycle matroid of the graph and the bond matroid of the dual graph with the topological parameters of the embedding. This will give an expression of the…

Combinatorics · Mathematics 2015-03-17 R. Askanazi , S. Chmutov , C. Estill , J. Michel , P. Stollenwerk

Inhomogeneous random graphs are fundamental models for real-world networks, where prescribed degrees are imposed as soft constraints. A common assumption in such models is that the degree distribution follows a power-law, capturing the…

Probability · Mathematics 2026-03-09 Riccardo Michielan , Clara Stegehuis , Bert Zwart

We propose the n-clique network as a powerful tool for understanding global structures of combined highly-interconnected subgraphs, and provide theoretical predictions for statistical properties of the n-clique networks embedded in a…

Physics and Society · Physics 2009-11-13 Kazuhiro Takemoto , Chikoo Oosawa , Tatsuya Akutsu

Topological Data Analysis (TDA) allows us to extract powerful topological and higher-order information on the global shape of a data set or point cloud. Tools like Persistent Homology or the Euler Transform give a single complex description…

Algebraic Topology · Mathematics 2025-11-04 Vincent P. Grande , Michael T. Schaub

We introduce topological invariants of knots and braid conjugacy classes, in the form of differential graded algebras, and present an explicit combinatorial formulation for these invariants. The algebras conjecturally give the relative…

Geometric Topology · Mathematics 2014-11-11 Lenhard Ng

Cluster analysis of very high dimensional data can benefit from the properties of such high dimensionality. Informally expressed, in this work, our focus is on the analogous situation when the dimensionality is moderate to small, relative…

Machine Learning · Statistics 2017-04-07 Fionn Murtagh

Network theory provides various tools for investigating the structural or functional topology of many complex systems found in nature, technology and society. Nevertheless, it has recently been realised that a considerable number of systems…

Data Analysis, Statistics and Probability · Physics 2012-03-23 Jonathan F. Donges , Hanna C. H. Schultz , Norbert Marwan , Yong Zou , Juergen Kurths

Classifying whole images is a classic problem in machine learning, and graph neural networks are a powerful methodology to learn highly irregular geometries. It is often the case that certain parts of a point cloud are more important than…

Computer Vision and Pattern Recognition · Computer Science 2020-03-19 Lindsey Gray , Thomas Klijnsma , Shamik Ghosh

In this paper, we introduce new combinatorial invariants of any finite simple graph, which arise in toric topology. We compute the $i$-th (rational) Betti number and Euler characteristic of the real toric variety associated to a graph…

Algebraic Topology · Mathematics 2015-07-31 Suyoung Choi , Hanchul Park

We provide a novel family of generative block-models for random graphs that naturally incorporates degree distributions: the block-constrained configuration model. Block-constrained configuration models build on the generalised…

Physics and Society · Physics 2021-02-24 Giona Casiraghi

In this paper, we propose a simple yet effective method to represent point clouds as sets of samples drawn from a cloud-specific probability distribution. This interpretation matches intrinsic characteristics of point clouds: the number of…

Computer Vision and Pattern Recognition · Computer Science 2020-10-22 Michał Stypułkowski , Kacper Kania , Maciej Zamorski , Maciej Zięba , Tomasz Trzciński , Jan Chorowski

We develop an algorithmic theory of convex optimization over discrete sets. Using a combination of algebraic and geometric tools we are able to provide polynomial time algorithms for solving broad classes of convex combinatorial…

Optimization and Control · Mathematics 2009-01-24 Shmuel Onn

We study the algebra of complex polynomials which remain invariant under the action of the local Clifford group under conjugation. Within this algebra, we consider the linear spaces of homogeneous polynomials degree by degree and construct…

Quantum Physics · Physics 2009-11-10 Maarten Van den Nest , Jeroen Dehaene , Bart De Moor

The paper describes clustering problems from the combinatorial viewpoint. A brief systemic survey is presented including the following: (i) basic clustering problems (e.g., classification, clustering, sorting, clustering with an order over…

Artificial Intelligence · Computer Science 2015-06-01 Mark Sh. Levin

Living systems exhibit complex yet organized behavior on multiple spatiotemporal scales. To investigate the nature of multiscale coordination in living systems, one needs a meaningful and systematic way to quantify the complex dynamics, a…

Adaptation and Self-Organizing Systems · Physics 2020-03-11 Mengsen Zhang , William D. Kalies , J. A. Scott Kelso , Emmanuelle Tognoli