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We use tools from applied topology for feature selection on time series data. We develop a method for scoring the variables in a multivariate time series that reflects their contributions to the topological features of the corresponding…

Algebraic Topology · Mathematics 2025-08-06 Peter Bubenik , Johnathan Bush

Networks built to model real world phenomena are characeterised by some properties that have attracted the attention of the scientific community: (i) they are organised according to community structure and (ii) their structure evolves with…

Social and Information Networks · Computer Science 2019-09-04 Giulio Rossetti , Rémy Cazabet

Topological data analysis (TDA) is a tool from data science and mathematics that is beginning to make waves in environmental science. In this work, we seek to provide an intuitive and understandable introduction to a tool from TDA that is…

Machine Learning · Computer Science 2025-07-15 Lander Ver Hoef , Henry Adams , Emily J. King , Imme Ebert-Uphoff

Dominant features of spatial data are connected structures or patterns that emerge from location-based variation and manifest at specific scales or resolutions. To identify dominant features, we propose a sequential application of…

Methodology · Statistics 2020-12-17 Roman Flury , Florian Gerber , Bernhard Schmid , Reinhard Furrer

Persistence-based topological optimization deforms a point cloud $X \subset \mathbb{R}^d$ by minimizing objectives of the form $L(X) = \ell(\mathrm{Dgm}(X))$, where $\mathrm{Dgm}(X)$ is a persistence diagram. In practice, optimization is…

Computational Geometry · Computer Science 2026-05-13 Abderrahim Bendahi , Alexandre Duplessis , Arnaud Fickinger

We combine standard persistent homology with image persistent homology to define a novel way of characterizing shapes and interactions between them. In particular, we introduce: (1) a mixup barcode, which captures geometric-topological…

Algebraic Topology · Mathematics 2026-05-19 Hubert Wagner , Nickolas Arustamyan , Matthew Wheeler , Peter Bubenik

There has been an increased interest in applying machine learning techniques on relational structured-data based on an observed graph. Often, this graph is not fully representative of the true relationship amongst nodes. In these settings,…

Machine Learning · Statistics 2022-08-05 Florence Regol , Soumyasundar Pal , Jianing Sun , Yingxue Zhang , Yanhui Geng , Mark Coates

Characterizing the loss of a neural network with respect to model parameters, i.e., the loss landscape, can provide valuable insights into properties of that model. Various methods for visualizing loss landscapes have been proposed, but…

Topological statistics, in the form of persistence diagrams, are a class of shape descriptors that capture global structural information in data. The mapping from data structures to persistence diagrams is almost everywhere differentiable,…

Machine Learning · Statistics 2021-02-24 Elchanan Solomon , Alexander Wagner , Paul Bendich

Biological and living systems process information across spatiotemporal scales, exhibiting the hallmark ability to constantly modulate their behavior to ever-changing and complex environments. In the presence of repeated stimuli, a…

Statistical Mechanics · Physics 2025-02-04 Giorgio Nicoletti , Matteo Bruzzone , Samir Suweis , Marco Dal Maschio , Daniel Maria Busiello

Accurately and efficiently extracting building footprints from a wide range of remote sensed imagery remains a challenge due to their complex structure, variety of scales and diverse appearances. Existing convolutional neural network…

Computer Vision and Pattern Recognition · Computer Science 2020-10-01 Qing Zhu , Cheng Liao , Han Hu , Xiaoming Mei , Haifeng Li

Impact of an intruder on granular matter leads to formation of mesoscopic force networks seen particularly clearly in the recent experiments carried out with photoelastic particles, e.g., Clark et al., Phys. Rev. Lett., 114 144502 (2015).…

Soft Condensed Matter · Physics 2018-01-17 T. Tadanaga , Abram H. Clark , T. Majmudar , L. Kondic

When training transformers on graph-structured data, incorporating information about the underlying topology is crucial for good performance. Topological masking, a type of relative position encoding, achieves this by upweighting or…

In low-resource settings, prevalence mapping relies on empirical prevalence data from a finite, often spatially sparse, set of surveys of communities within the region of interest, possibly supplemented by remotely sensed images that can…

Applications · Statistics 2015-05-27 Peter J. Diggle , Emanuele Giorgi

We introduce TopoNets, end-to-end probabilistic deep networks for modeling semantic maps with structure reflecting the topology of large-scale environments. TopoNets build a unified deep network spanning multiple levels of abstraction and…

Robotics · Computer Science 2020-03-12 Kaiyu Zheng , Andrzej Pronobis

Biological systems leverage top-down feedback for visual processing, yet most artificial vision models succeed in image classification using purely feedforward or recurrent architectures, calling into question the functional significance of…

Neurons and Cognition · Quantitative Biology 2025-08-12 Antonino Greco , Marco D'Alessandro , Karl J. Friston , Giovanni Pezzulo , Markus Siegel

Machine learning has emerged as an attractive alternative to experiments and simulations for predicting material properties. Usually, such an approach relies on specific domain knowledge for feature design: each learning target requires…

Materials Science · Physics 2020-03-10 Aditi S. Krishnapriyan , Maciej Haranczyk , Dmitriy Morozov

Many edge and contour detection algorithms give a soft-value as an output and the final binary map is commonly obtained by applying an optimal threshold. In this paper, we propose a novel method to detect image contours from the extracted…

Computer Vision and Pattern Recognition · Computer Science 2021-05-12 Zahra Mousavi Kouzehkanan , Reshad Hosseini , Babak Nadjar Araabi

We introduce a novel data-driven approach to discover and decode features in the neural code coming from large population neural recordings with minimal assumptions, using cohomological feature extraction. We apply our approach to neural…

Neurons and Cognition · Quantitative Biology 2018-09-11 Erik Rybakken , Nils Baas , Benjamin Dunn

A density-based topology optimization framework is developed to manipulate characteristic modes of conducting surfaces. The adjoint sensitivity analysis provides an efficient computation of the material gradient utilized by the local…

Optimization and Control · Mathematics 2025-02-07 Jonas Tucek , Miloslav Capek , Lukas Jelinek
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